| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,841,413 – 15,841,519 |
| Length | 106 |
| Max. P | 0.668783 |
| Location | 15,841,413 – 15,841,519 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.65 |
| Mean single sequence MFE | -36.88 |
| Consensus MFE | -20.13 |
| Energy contribution | -21.97 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.668783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15841413 106 - 27905053 CCUUGCACGUGAUCUCAGUGGUCUUCAACGCCUUCUUUUUGGGUGCCUUCUU---CUUUGCAGGCCGCUCGCAGGGAUCCUCCUUGCAGGGAUCUGUGAUUAGAGGACA ((((.((((.((((((((((((((.((((((((.......))))).......---..))).)))))))).((((((.....)))))).))))))))))....))))... ( -42.90) >DroSec_CAF1 4094 106 - 1 CCUUGCACGUGAUCUCAGUGGUAUUCAACGCUUUCUUCUUGGGUGCCUUCUU---CUUACCAGGCCGCUCGCAGGGAUCCUCCUUGCAGGGAUCUGUGAUUAGGGGACA (((..((((.((((((((((........))))........((((((((....---......))).)))))((((((.....)))))).))))))))))...)))..... ( -36.40) >DroSim_CAF1 7683 106 - 1 CCUUGCACGUGAUCUCAGUGGUAUUCAAGGCUUUCUUCUUGGGUGCCUUCUU---CUUACCAGGCCGCACGCAGGGAUCCUCCUUGCAGGGAUCUGUGAUUAAGGGACA (((((((((.((((((...(((((((((((......))))))))))).....---...............((((((.....)))))).))))))))))..))))).... ( -38.90) >DroEre_CAF1 3953 103 - 1 CCUUGCACGUGAUCUCAGUGGUUUUUAAAGCCUU---CUUUGGAGUCUUCUU---CUUUUUAGGUCGCUCGCAGGGAUCGUCCUUGCAAGGAUCUGUGAUCAGCGGACA ...((..(((((((.(((.((((.....)))).(---((((.((((..(((.---......)))..))))((((((.....))))))))))).))).))))).))..)) ( -32.00) >DroYak_CAF1 5486 103 - 1 CCUUGCACGUAAUGUCGUUGGUUUUUAAAGCCUU---CUUGGGUGGCUUCUU---UUUUGGAGGCCGCACGCAGGGAUCCUCCUUGCAAGGAUCUGUGAUUAGGGGACA (((..(((...........((((.....))))((---(((..(((((((((.---....)))))))))..((((((.....)))))))))))...)))...)))..... ( -35.80) >DroAna_CAF1 3739 107 - 1 --UGGGCGGUUACAUCUAAGGCGCUGGAAGCCUUCUUUUUUGGCGGCUUCUUGGUCUUUUCUGGACGCUUGCAGGGGUCUUCUUUGCAGGGAUCAGUGAUCAGAGGACA --..((((.((.......)).))))(((((((.((......)).)))))))..(((((((((((.(.(((((((((.....)))))))))).)))).....))))))). ( -35.30) >consensus CCUUGCACGUGAUCUCAGUGGUAUUCAAAGCCUUCUUCUUGGGUGCCUUCUU___CUUUCCAGGCCGCUCGCAGGGAUCCUCCUUGCAGGGAUCUGUGAUUAGGGGACA ((((.((((.((((((...(((((((((..........))))))))).......................((((((.....)))))).))))))))))....))))... (-20.13 = -21.97 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:30 2006