Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,834,894 – 15,835,014 |
Length | 120 |
Max. P | 0.989540 |
Location | 15,834,894 – 15,835,014 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -44.00 |
Consensus MFE | -40.72 |
Energy contribution | -41.17 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -1.99 |
Structure conservation index | 0.93 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15834894 120 + 27905053 GCACUUCACCACUGGCUCCAUCGACGAGCGGGAAUACCUGAUUGCGGAGCGCUUUGCCACUCUGUACGGUAUUGUGGUCUACCGUACAGCGGCCAAUCUGCUGGAGCCAGUUUGUUCAAC ..........(((((((((.(((.(((.((((....)))).))))))((((..(((((...((((((((((........)))))))))).)).)))..)))))))))))))......... ( -49.00) >DroEre_CAF1 59635 120 + 1 ACACUUCACCACAGGCUCCAUCGACGAACGGGAGUACCUGAUUGCGGAGCGCUUUGCCACUCUGUACGGUAUCGUGGUCUACCGUACUGCGGCUAAUCUUCUGGAGCCUGUUUGCUCCAC ..........(((((((((((((.(((.((((....)))).))))))........(((.(...((((((((........)))))))).).)))........))))))))))......... ( -43.10) >DroYak_CAF1 64188 120 + 1 ACACUUCACCACUGGCUCCAUCGACGAGCGGGAGUACCUGAUUGCAGAGCGCUUUGCCACUCUGUACGGUAUUGUGGUCUACCGUACUGCGGCCAAUCUGCUAGAGCCGGUUUGUUCUAC ..........((((((((..((..(((.((((....)))).)))..))(((..(((((.(...((((((((........)))))))).).)).)))..)))..))))))))......... ( -39.90) >consensus ACACUUCACCACUGGCUCCAUCGACGAGCGGGAGUACCUGAUUGCGGAGCGCUUUGCCACUCUGUACGGUAUUGUGGUCUACCGUACUGCGGCCAAUCUGCUGGAGCCAGUUUGUUCAAC ..........(((((((((.(((.(((.((((....)))).))))))((((..(((((.(...((((((((........)))))))).).))).))..)))))))))))))......... (-40.72 = -41.17 + 0.45)
Location | 15,834,894 – 15,835,014 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -47.27 |
Consensus MFE | -46.48 |
Energy contribution | -45.93 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.11 |
Mean z-score | -2.58 |
Structure conservation index | 0.98 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15834894 120 - 27905053 GUUGAACAAACUGGCUCCAGCAGAUUGGCCGCUGUACGGUAGACCACAAUACCGUACAGAGUGGCAAAGCGCUCCGCAAUCAGGUAUUCCCGCUCGUCGAUGGAGCCAGUGGUGAAGUGC ......((.((((((((((...(((.(((.(((((((((((........)))))))))(((((......))))).)).....((.....))))).)))..))))))))))..))...... ( -49.30) >DroEre_CAF1 59635 120 - 1 GUGGAGCAAACAGGCUCCAGAAGAUUAGCCGCAGUACGGUAGACCACGAUACCGUACAGAGUGGCAAAGCGCUCCGCAAUCAGGUACUCCCGUUCGUCGAUGGAGCCUGUGGUGAAGUGU .((((((......))))))........(((((.((((((((........))))))))...)))))...(((((.(((...((((..((((((.....))..))))))))..))).))))) ( -48.60) >DroYak_CAF1 64188 120 - 1 GUAGAACAAACCGGCUCUAGCAGAUUGGCCGCAGUACGGUAGACCACAAUACCGUACAGAGUGGCAAAGCGCUCUGCAAUCAGGUACUCCCGCUCGUCGAUGGAGCCAGUGGUGAAGUGU .....(((.((((((((((...(((.(((.((.((((((((........))))))))((((((......)))))))).....((.....))))).)))..)))))))...)))....))) ( -43.90) >consensus GUAGAACAAACAGGCUCCAGCAGAUUGGCCGCAGUACGGUAGACCACAAUACCGUACAGAGUGGCAAAGCGCUCCGCAAUCAGGUACUCCCGCUCGUCGAUGGAGCCAGUGGUGAAGUGU ......((.((((((((((...(((.(((.((.((((((((........)))))))).(((((......))))).)).....((.....))))).)))..))))))))))..))...... (-46.48 = -45.93 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:25 2006