Locus 6010

Sequence ID 3R_DroMel_CAF1
Location 15,834,294 – 15,834,385
Length 91
Max. P 0.614063
window9809

overview

Window 9

Location 15,834,294 – 15,834,385
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 84.25
Mean single sequence MFE -20.43
Consensus MFE -15.25
Energy contribution -14.70
Covariance contribution -0.55
Combinations/Pair 1.17
Mean z-score -1.83
Structure conservation index 0.75
SVM decision value 0.16
SVM RNA-class probability 0.614063
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15834294 91 + 27905053
GGAAACUCGCUGCGAGAGUCUGGCAGCACUUGCAACCAUCGAUAUAAACUAUUGGUAACGAAUAUUUAAAGAAUUAACUUUAUAGUUCCAU
((((..(((((((.((...)).)))))..........(((((((.....)))))))...)).....(((((......)))))...)))).. ( -19.20)
>DroEre_CAF1 59050 91 + 1
GGAUACUUGCUGCAAGAGUCUGGCAGCACUUCCAACCAUCGAUAAAAACUGUUGGUGACGAAUAUUCAAGGAAUUAACUCUAUAAUUCCGC
(((....((((((.((...)).))))))..)))...((((((((.....))))))))............(((((((......))))))).. ( -25.20)
>DroYak_CAF1 63575 91 + 1
GAAAACUUGCUGCAAGAGUCUGGCAGCACUUGACACCAUCGGUAUAAACUAUUGGUAACAAAUAUUUAAAGAAUUAACUACAUCAUUUCAC
((((...((((((.((...)).)))))).(((..((((..(((....)))..))))..)))........................)))).. ( -16.90)
>consensus
GGAAACUUGCUGCAAGAGUCUGGCAGCACUUGCAACCAUCGAUAUAAACUAUUGGUAACGAAUAUUUAAAGAAUUAACUAUAUAAUUCCAC
((((....(((((.((...)).)))))..........(((((((.....))))))).............................)))).. (-15.25 = -14.70 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:23 2006