Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,228,970 – 2,229,060 |
Length | 90 |
Max. P | 0.902422 |
Location | 2,228,970 – 2,229,060 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 90.88 |
Mean single sequence MFE | -14.62 |
Consensus MFE | -12.14 |
Energy contribution | -12.34 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.11 |
Mean z-score | -1.71 |
Structure conservation index | 0.83 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2228970 90 - 27905053 CCAAAUCCAUUAAUCUCCGAAUUUUGUGCAUUAUGCAAUACAAUCGAAGCAUAAA--AAAGAGCACGAAAGCACGCAAAUUAUUUGCAUAUU .....................((((((((.((((((............)))))).--.....))))))))....((((.....))))..... ( -14.10) >DroSec_CAF1 18209 92 - 1 CCAAAUCUAUUAAUCUCCGAAUUUUGUGCAUUAUGCAAUACAAUCGAAGCAUAAAAAAAAGAGCACGAAAGCACGCAAAUUAUUUGCAUAUU .....................((((((((.((((((............))))))........))))))))....((((.....))))..... ( -13.40) >DroSim_CAF1 18484 90 - 1 CCAAAUCCAUUAAUCUCCGAAUUUUGUGCAUUAUGCAAUACAGUCGA-GCAUAAAA-AAAGAGCACGAAAGCACGCAAAUUAUUUGCAUAUU .....................((((((((.((((((...........-))))))..-.....))))))))....((((.....))))..... ( -13.60) >DroEre_CAF1 18168 89 - 1 CCAAACGCAUUAAUCUCCGAAAUUCGUGCAUUAUGCAAUACAAUCGAAGCAUAAA---ACGAGCACGAAAGCACGCCAAUUAUUUGCAUAUU ......(((.((((...((...(((((((.((((((............)))))).---....)))))))....))...))))..)))..... ( -16.70) >DroYak_CAF1 17096 89 - 1 CCAAAACCAUUAAUAUACAAAUUUCGUGCAUUAUGCAAUAUAAUCGAAGCAUAAA---AAGAGCACGAAAGCACGUCAAUUAUUUGCACAUU .....................((((((((.((((((............)))))).---....))))))))(((.((.....)).)))..... ( -15.30) >consensus CCAAAUCCAUUAAUCUCCGAAUUUUGUGCAUUAUGCAAUACAAUCGAAGCAUAAA__AAAGAGCACGAAAGCACGCAAAUUAUUUGCAUAUU .....................((((((((.((((((............))))))........))))))))....((((.....))))..... (-12.14 = -12.34 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:06 2006