| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,821,175 – 15,821,279 |
| Length | 104 |
| Max. P | 0.956203 |
| Location | 15,821,175 – 15,821,279 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.69 |
| Mean single sequence MFE | -26.97 |
| Consensus MFE | -15.39 |
| Energy contribution | -14.63 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.956203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15821175 104 - 27905053 U-------GUGCGGAGUACAUCUACAUCUUCAGCUACAUCUACCUGAAAGUGCAGCCAAGAAGGACA-UCAGCUGCCACAAUGACAACGG-AAGGUGUCAAAUCAGGAAGGAA (-------((((((((...........)))).)).)))(((.(((((..(((((((...((......-)).)))).)))..(((((.(..-..).)))))..))))).))).. ( -29.40) >DroEre_CAF1 45956 86 - 1 U-------GUGCGGAGUACU------------------UCUACCUGGAAGUGCAGUCGAGAAGGACA-UCAGCUGCCACAAUGACAACGG-AAGGUGUCAAAUCAGGAAGGAA .-------((((...))))(------------------(((.(((((..(((((((.((........-)).)))).)))..(((((.(..-..).)))))..))))).)))). ( -27.60) >DroAna_CAF1 60284 103 - 1 UGGUACUCCUGCGGAGUACC--UACA--------UACAUUUACCUGAAAAUGCAACCACGAAGGACAAACAGCUGCCACAAUGACAAUAGAAAGGUGUUAAAUCAGGAAGGAA .((((((((...))))))))--....--------........(((((....(((.((.....((.((......)))).......(....)...)))))....)))))...... ( -23.90) >consensus U_______GUGCGGAGUACA__UACA________UACAUCUACCUGAAAGUGCAGCCAAGAAGGACA_UCAGCUGCCACAAUGACAACGG_AAGGUGUCAAAUCAGGAAGGAA ......................................(((.(((((....(((((...............))))).....(((((.(.....).)))))..))))).))).. (-15.39 = -14.63 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:22 2006