| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,816,771 – 15,816,882 |
| Length | 111 |
| Max. P | 0.535679 |
| Location | 15,816,771 – 15,816,882 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 89.44 |
| Mean single sequence MFE | -31.27 |
| Consensus MFE | -23.95 |
| Energy contribution | -23.73 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15816771 111 - 27905053 GCGGCAGCCAUAAUUGCGGCUUAUUUACAUUCUUUUCGGGUGCAAAUUUUAGUUGCGAGCU--GGGUUAAUUAGACGACUCGUAAAUUAUGCAGUCGAUAAAUGUGCAAAUU--U (((..((((....((((((((.((((.(((((.....))))).))))...))))))))...--.)))).......(((((((((...)))).))))).......))).....--. ( -28.70) >DroEre_CAF1 41669 111 - 1 GCAGCAGCCAUAAUUGCGGCUUAUUUACAUUCUUUUCGGGUGCAAAUUUUAGUUGCGAGCU--GGGUUAAUUAGACGGCUCGUAAAUUAUGCAGUCGAUAAAUGUGCAAAUU--U ...((((((........)))).....(((((....((((.((((........(((((((((--(...........))))))))))....)))).))))..))))))).....--. ( -33.30) >DroAna_CAF1 55577 115 - 1 GCAACAACCAUAAUUGCGGCUAAUUUGCAUUCUUUUUGGGCGCAAAUUUUAGUUGCGAGUUGUGGGUUAAUUAGGCAACUCGUUAAAUAUGCAGUCGAUAAAUGUGUAAAUUCUU (((....(((((((((((((((((((((.(((.....))).))))))..))))))).)))))))).(((((.((....)).)))))...)))....................... ( -31.80) >consensus GCAGCAGCCAUAAUUGCGGCUUAUUUACAUUCUUUUCGGGUGCAAAUUUUAGUUGCGAGCU__GGGUUAAUUAGACGACUCGUAAAUUAUGCAGUCGAUAAAUGUGCAAAUU__U (((..((((....((((((((.((((.(((((.....))))).))))...))))))))......)))).......((((((((.....))).))))).......)))........ (-23.95 = -23.73 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:21 2006