Locus 6004

Sequence ID 3R_DroMel_CAF1
Location 15,797,729 – 15,797,823
Length 94
Max. P 0.918597
window9800

overview

Window 0

Location 15,797,729 – 15,797,823
Length 94
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 91.62
Mean single sequence MFE -11.28
Consensus MFE -11.02
Energy contribution -10.77
Covariance contribution -0.25
Combinations/Pair 1.14
Mean z-score -1.16
Structure conservation index 0.98
SVM decision value 1.12
SVM RNA-class probability 0.918597
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15797729 94 + 27905053
AUGGCAAUAAAAAUGAAACUAUGCGUUAAUUGCAAUUCCCAAUUGACCACAAAACGAACACGAGCCACAAAAUUUCCAACAUAAACUCGACC--AA
.((((................((.((((((((.......)))))))))).....((....)).)))).........................--.. ( -12.10)
>DroSec_CAF1 19038 94 + 1
AUGGCAAUAAAAAUGAAACUAUACGUUAAUUGCAAUUCCCAAUUGACCACAAAACGAACACGAGCCACAAAAUUUCCAGCAUAAACUCGACC--AA
.((((...................((((((((.......)))))))).......((....)).)))).........................--.. ( -11.30)
>DroSim_CAF1 23525 94 + 1
AUGGCAAUAAAAAUGAAACUAUACGUUAAUUGCAAUUCCCAAUUGACCACAAAACGAACACGAGCCACAAAAUUUCCAACAUAAACUCGACC--AA
.((((...................((((((((.......)))))))).......((....)).)))).........................--.. ( -11.30)
>DroEre_CAF1 22947 94 + 1
AUGGCAAUAAAAAUGAAACUAUGCGUUAAUUGCAAUUCCCAAUUGACCACAAAACGAACACGAGCCACAAAAUUUCCAACAUAAGCUCGACU--AU
.((((................((.((((((((.......)))))))))).....((....)).)))).........................--.. ( -12.10)
>DroYak_CAF1 46080 94 + 1
AUGGCAAUAAAAAUGAAACUAUGCGUUAAUUGCAAUUCCCAAAUGACCACACCACGAACACGAGCCACAAAAUUUCCAAAAUAAGCUUGACC--GG
.((((................((((.....))))....................((....)).)))).........................--.. (  -8.90)
>DroAna_CAF1 37950 96 + 1
AUGGCAAUAAAAAUAAAACUAUGCGUUAAUUGCAAUUCCCAAUUGACCACAAAAUGUACACAAGCCGCAAAAUUCCCAACAUAAACUCGGCAUUGG
....((((.............((.((((((((.......))))))))))..............((((....................)))))))). ( -11.95)
>consensus
AUGGCAAUAAAAAUGAAACUAUGCGUUAAUUGCAAUUCCCAAUUGACCACAAAACGAACACGAGCCACAAAAUUUCCAACAUAAACUCGACC__AA
.((((...................((((((((.......)))))))).......((....)).))))............................. (-11.02 = -10.77 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:15 2006