Locus 6003

Sequence ID 3R_DroMel_CAF1
Location 15,795,969 – 15,796,067
Length 98
Max. P 0.793067
window9799

overview

Window 9

Location 15,795,969 – 15,796,067
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 84.59
Mean single sequence MFE -27.92
Consensus MFE -19.76
Energy contribution -19.30
Covariance contribution -0.46
Combinations/Pair 1.32
Mean z-score -2.02
Structure conservation index 0.71
SVM decision value 0.59
SVM RNA-class probability 0.793067
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15795969 98 + 27905053
CUAUCCGAAGAGGAUUCAAGGGAAGCCUCUGAAUACGCUAGAUAAUUAAGCUUCAAGCUUGAAGGACAGCCACUAUGAGUGGCAGCCACACUCGGUCU
....(((((((((.(((....))).)))))......(((......((((((.....))))))......(((((.....)))))))).....))))... ( -29.90)
>DroSec_CAF1 17309 98 + 1
CAGUCCGAGGAGAAUUCAAGGGAAGCCUUUGAAUAAGCUAGAUAAUUAAGCUUCAAGUUUGAAGGACAGCCACUAUGAGUGGCAGCCACACUCGCUCU
......((((((.(((((((((...)))))))))..(((...........(((((....)))))....(((((.....))))))))....))).))). ( -30.30)
>DroSim_CAF1 21812 90 + 1
CUAUCCGAGGAGGAU--------AGCCUUUGAAUAAGCUAGAUAAUUAAGCUUCAAGCUUGAAGGACAGCCACUAUGAGUGGCAGCCACACUCGCUCU
((((((.....))))--------))..........(((.((....((((((.....)))))).((...(((((.....)))))..))...)).))).. ( -27.10)
>DroEre_CAF1 21307 98 + 1
AUAUCCAGGGAGCCUUCAACAGAAGCCUUCGAAUAAGCUAGAUAAUUAAGCUUCAAGCUUGAAGGACAGGCACUACGAGUGGCAGUCACACUCAGUCU
...(((..((((.((((....)))).))))...((((((.((..........)).))))))..)))..........(((((.......)))))..... ( -24.10)
>DroYak_CAF1 41327 98 + 1
CUAUCCAAGAAGGCAUCAACAGGAGCCUUCGAAUAAGCUAGAUAAUUAAGCGUCAAGCUUGAAGGAUACGCACUAUGAGUGGCAGACAUACUCGGUCU
.(((((..((((((.((.....))))))))...((((((.(((........))).))))))..))))).......((((((.......)))))).... ( -28.20)
>consensus
CUAUCCGAGGAGGAUUCAACAGAAGCCUUUGAAUAAGCUAGAUAAUUAAGCUUCAAGCUUGAAGGACAGCCACUAUGAGUGGCAGCCACACUCGGUCU
...(((..(((((.(((....))).)))))...............((((((.....)))))).)))..........(((((.......)))))..... (-19.76 = -19.30 +  -0.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:14 2006