Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,792,804 – 15,792,907 |
Length | 103 |
Max. P | 0.985607 |
Location | 15,792,804 – 15,792,907 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 86.47 |
Mean single sequence MFE | -41.06 |
Consensus MFE | -31.62 |
Energy contribution | -33.06 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.14 |
Mean z-score | -2.73 |
Structure conservation index | 0.77 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15792804 103 + 27905053 GACUUUUUGAGUGAAGGAUGUGGUUUGGCCUCAAAAAGACCAACUUGGCAUCGCUUGUGGCAGGACUCUGUGUCUGCGUCGCAGGACGCGUUCGAGUCUGUCA ...((((((((.(..((((...))))..)))))))))(((..((((((...((((((((((.((((.....))))..)))))))).))...))))))..))). ( -34.50) >DroSec_CAF1 14186 99 + 1 GGCUUUUUGAGCGAAGG----GGUUUGGCCUGAAAAAGGCCAACUUGGCAUCGCUUGUGGCAGGACUCUGUGUCUGCGUCGCAGGACGCAUUCGAGUCUGUCA .(((...(((((((.((----((((.(((((.....))))))))))..).))))))).))).(((((((((((((((...))).))))))...)))))).... ( -40.00) >DroSim_CAF1 18669 103 + 1 GACUUUUCGAGCGAAGGAUGUGGUUUGGCCUGAAAAAGGCCAACUUGGCAUCACUUGUGGCAGGACUCUGUGUCUGCGUCGCAGGACGCGUUCGAGUCUGUCA (((..((((((((...(((((.(.(((((((.....)))))))..).))))).((((((((.((((.....))))..))))))))...))))))))...))). ( -49.00) >DroEre_CAF1 18157 100 + 1 AACUUUCCGUGUGAAGGAUGUUGGAUGGCCGGAAAACGGCCAACUUGGCAUCGCUUGUGGCAGGACC---UGUCUGUGUCGCAGGACGCGUUCGAGUCUGUCA .((((..(((((....(((((..(.((((((.....))))))..)..))))).((((((((((((..---..))).))))))))))))))...))))...... ( -40.60) >DroYak_CAF1 35880 100 + 1 AGCUUUUCGAGUGAAGGAUGUUGGUUGGCCUGAAAAGGGCCAAAUUGGCAUCGCUGGUGGCAGGACU---UGUCUCUGUCGGAGGACGAGUUCGAGUCUGUCA (((.((((....))))(((((..((((((((.....))))).)))..))))))))..((((((.(((---((.(((.(((....))))))..))))))))))) ( -41.20) >consensus GACUUUUCGAGUGAAGGAUGUGGUUUGGCCUGAAAAAGGCCAACUUGGCAUCGCUUGUGGCAGGACUCUGUGUCUGCGUCGCAGGACGCGUUCGAGUCUGUCA (((..((((((((...(((((...(((((((.....)))))))....))))).((((((((.((((.....))))..)))))))).)))..)))))...))). (-31.62 = -33.06 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:11 2006