Locus 6000

Sequence ID 3R_DroMel_CAF1
Location 15,791,873 – 15,791,970
Length 97
Max. P 0.999732
window9795

overview

Window 5

Location 15,791,873 – 15,791,970
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 95.57
Mean single sequence MFE -25.00
Consensus MFE -23.18
Energy contribution -23.74
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.43
Structure conservation index 0.93
SVM decision value 3.97
SVM RNA-class probability 0.999732
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15791873 97 + 27905053
CAAAGUUACUAAGUAAUUUCUUUAGAGGCGUUGGCUGAAAAACUUAGUCAACGUUUAAUGAACGAUUAGCCCAAGGACUAACUUAGACUUAUACGUA
..((((..((((((....(((((.(.((((((((((((.....)))))))))((((...)))).....)))))))))...))))))))))....... ( -25.40)
>DroSec_CAF1 13189 97 + 1
CAAAGUUACUAAGUAAUUUCUUUAGGGGCGUUGGCUGAAAAACUUAGUCAACGUUUAAUGAACGAUUAGCCCAAGGACUAACUUAGACUUAUACGUG
..((((..((((((.(.(((((...(((((((((((((.....)))))))))((((...)))).....))))))))).).))))))))))....... ( -27.70)
>DroSim_CAF1 17675 97 + 1
CAAAGUUACUAAGUAAUUUCUUUAGGGGCGUUGGCUGAAAAACUUAGUCAACGUUUAAUGAACGAUUAGCCCAAGGACUAACUUAGACUUAUACGUG
..((((..((((((.(.(((((...(((((((((((((.....)))))))))((((...)))).....))))))))).).))))))))))....... ( -27.70)
>DroEre_CAF1 17186 97 + 1
GAAAGUUACUAAGUAAUUUCUUUAGAGGCGUUGGCUGAAAAACUUAGUCAACGUUUAAUGAACGAUUAGCCCAAGGACUAGCUCAAACUUAUGCGUA
....((...(((((...(((.....(((((((((((((.....)))))))))))))...))).((((((((...)).)))).))..))))).))... ( -22.40)
>DroYak_CAF1 34908 97 + 1
GAAAGUUACUAAGUAAUUUCUGUAGAGGCGUUGGCUGAAAAACUUAGUCAACGUUUAAUGAACGAUUAGCCCAAGGACUAGCUUACACUUAUACGUA
..((((...(((((.(.((((...(.((((((((((((.....)))))))))((((...)))).....)))).)))).).))))).))))....... ( -21.80)
>consensus
CAAAGUUACUAAGUAAUUUCUUUAGAGGCGUUGGCUGAAAAACUUAGUCAACGUUUAAUGAACGAUUAGCCCAAGGACUAACUUAGACUUAUACGUA
..((((..((((((....(((((.(.((((((((((((.....)))))))))((((...)))).....)))))))))...))))))))))....... (-23.18 = -23.74 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:10 2006