Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,228,077 – 2,228,174 |
Length | 97 |
Max. P | 0.940603 |
Location | 2,228,077 – 2,228,174 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 82.39 |
Mean single sequence MFE | -22.64 |
Consensus MFE | -16.07 |
Energy contribution | -15.82 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -2.24 |
Structure conservation index | 0.71 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2228077 97 - 27905053 GUUAUUCAUCAAAUUCUUCUGAUUUGGUGCCAUAUACCUAACACUUAGGUAGCAAAUCUUCUCGGAAACGAUUAGAUACACUUAAA--AAGAUUUCGAU-- ......(((((((((.....))))))))).....((((((.....))))))....((((..(((....)))..)))).........--...........-- ( -20.80) >DroSec_CAF1 17329 99 - 1 GUUAUUCAUCAAAUUCCAGUGAUUUGGUGCACUAUACCUAACGAUUAGGUAGCAAAUCUUCUCGGAAACGAUUAG-UACACUUAAA-AAAGAUUUCGCUGU ................((((((...((((.((((((((((.....))))))..........(((....))).)))-).))))....-.......)))))). ( -22.44) >DroSim_CAF1 17603 100 - 1 GUUAUUCAUCAAAUUCCAGUGAUUUGGUGCAAUAUACCUAACGCUUAGGUAGCAAAUCUUCUCGGAAACGAUUAG-UACACUUAAAAAAAGAUUUCGCUGU ..(((((((((((((.....))))))))).))))((((((.....))))))(((((((((.(((....)))..((-....))......))))))).))... ( -23.10) >DroEre_CAF1 17299 94 - 1 -----UCAUCAAAUUCCAGUGAUUUGGAGCAAUAUACCUGCAACUUAGGUGGCAAUACUUCUCGGAAACGAGUCGUCCCACUUGAA-AAAG-AUUCAUUUU -----..(((....(((((....)))))(((.......)))...((((((((....((..((((....))))..)).)))))))).-...)-))....... ( -24.20) >consensus GUUAUUCAUCAAAUUCCAGUGAUUUGGUGCAAUAUACCUAACACUUAGGUAGCAAAUCUUCUCGGAAACGAUUAG_UACACUUAAA_AAAGAUUUCGCUGU ......(((((((((.....))))))))).....((((((.....))))))(.(((((((.(((....))).................))))))))..... (-16.07 = -15.82 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:05 2006