| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,787,001 – 15,787,102 |
| Length | 101 |
| Max. P | 0.702652 |
| Location | 15,787,001 – 15,787,102 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.82 |
| Mean single sequence MFE | -26.78 |
| Consensus MFE | -17.05 |
| Energy contribution | -17.25 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.702652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15787001 101 + 27905053 GCGGGCAGGUGAGCCUGCAAUCCGUGCGAGUUCAAUUGAGCAGCAAAUUGUCAUGGCAAAUGUU-----CAAAAAA-AAAAAGUAUAU------AUGUAUAUGACAGUGAAUG (((((((((....)))))...))))((..((((....)))).))..((((((((((((.((((.-----.......-.......))))------.))).)))))))))..... ( -28.86) >DroSec_CAF1 8274 101 + 1 GCGGGCAGGUGAGCCUGCAAUCCGUGCGAGUUCAAUUGAGCAGCAAAUUGUCAUGGCAAAUUUU-----CAAAAAA-GUAAAGUAUAU------AUGUAUAUGACAGCGAAUG ((((((......))))))....(((((..((((....)))).))....((((((((((.(((((-----(......-).)))))....------.))).)))))))))).... ( -25.20) >DroSim_CAF1 12739 102 + 1 GCGGGCAGGUGAGCCUGCAAUCCGUGCGAGUUCAAUUGAGCAGCAAAUUGUCAUGGCAAAUGUU-----CAAAAAAAAAAAAGUUUAU------AUGUAUAUGACAGCGAAUG ((((((......))))))....(((((..((((....)))).))....((((((((((.(((..-----(............)..)))------.))).)))))))))).... ( -27.30) >DroEre_CAF1 12005 103 + 1 GCGGGCGGGUGAGCCUGCAAUCCGUGCGAGUUCAAUUGAGCAGCAAAUUGUCAUGGCAAACGUU-----CAAAAAA-----AGCAUAUAGGUACAGGUAUAUGACAGUGAAUG ((((((......))))))......(((..((((....)))).)))..((((....)))).((((-----((.....-----..((((((........))))))....)))))) ( -28.60) >DroYak_CAF1 29514 89 + 1 GCAGGCAGGUGGGCCUGCAAUCCGUGCGAGUUCAAUUGAGCAGCAAAUUGUCAUGGCAAAUGUU-----CAAAAAA-----AGUAUAU--------GUGUAUGACUG------ ((((((......))))))......(((..((((....)))).)))....((((((.((.((((.-----(......-----.).))))--------.))))))))..------ ( -25.80) >DroAna_CAF1 27885 104 + 1 GUGGCAGCGAGUGCCUGCAAUCCGAGAGUGUUCAAUUGAGCAGCAAAUUGUCAUGGCAAAUGUUGGCAGCAAAAAA-AAAAUCCCCAC------CUAUAUACGUGAGUGCA-- .((.(((((..((((((((((.(....)(((((....)))))....)))).)).))))..))))).))........-...........------.....(((....)))..-- ( -24.90) >consensus GCGGGCAGGUGAGCCUGCAAUCCGUGCGAGUUCAAUUGAGCAGCAAAUUGUCAUGGCAAAUGUU_____CAAAAAA_AAAAAGUAUAU______AUGUAUAUGACAGUGAAUG ((((((......)))))).....((((..((((....))))......((((....)))).......................))))........................... (-17.05 = -17.25 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:05 2006