Locus 5996

Sequence ID 3R_DroMel_CAF1
Location 15,786,244 – 15,786,363
Length 119
Max. P 0.572504
window9789

overview

Window 9

Location 15,786,244 – 15,786,363
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.56
Mean single sequence MFE -31.04
Consensus MFE -24.58
Energy contribution -25.42
Covariance contribution 0.84
Combinations/Pair 1.06
Mean z-score -1.47
Structure conservation index 0.79
SVM decision value 0.08
SVM RNA-class probability 0.572504
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15786244 119 - 27905053
UGUUUUUAAAUGUUUCUUACAUACUUUUUGGUUUGACAUAAGCCACAGCACCGUAUCGUGUAUCUGGGAGGGUAUUCCAUGCUUUGGUAUGCGAUGCCUGCCC-UCCUAUCCUGCUGUUU
.........((((.....)))).......((((((...))))))(((((((((...)).))...((((((((((.(((((((....))))).))....)))))-)))))....))))).. ( -32.60)
>DroSec_CAF1 7564 120 - 1
UGUUUUUAAAUGUUUCUUACAUACUUUUUGGUUUGACAUAAACCACAGCACCGUAUCGUGUGUCUGGGAGGGUAUUCCAUGCUUUGGUAUGCGAUGCCUGCCCAUCCUUUGCUGCUGUUU
.........((((.....)))).......((((((...))))))((((((..(((......(..((((.(((((((.(((((....))))).))))))).))))..)..))))))))).. ( -33.40)
>DroSim_CAF1 11987 120 - 1
UGUUUUUAAAUGUUUCUUACAUACUUUUUGGUUUGACAUAAACCACAGCACCGUAUCGUGUAUCUGGGAGGGUAUUCCAUGCUUUGGUAUGCGAUGCCUGCCCAUCCUUUGCUGCUGUUU
.........((((.....)))).......((((((...))))))((((((..(((..(.(....((((.(((((((.(((((....))))).))))))).)))).))..))))))))).. ( -32.80)
>DroEre_CAF1 11261 119 - 1
UGUUUUGAAAUGUUUCUAACAUACUUUUUGGUUCGGCAUAAGCCACAGCACCGUAUCGGGUAUCUGGGAGGGUAUUCCAAGCUUUGGUAUGCGAUGCCUGUCC-UCCAUUCCCGCCGUUU
((((..(((....))).))))............((((....((....))........(((.((..(((((((((((.((.((....)).)).))))))).)))-)..)).)))))))... ( -29.20)
>DroYak_CAF1 28736 118 - 1
UGUUUUGAAAUGUUUCUUACAUACUUUUUGGUUUGGCAUAAACCACAUCACCGUAUCGUGUAUCUGGGAGGGUAUUCCAUGCUUUGGUAUGCGAUGCCGG-CC-CCCUUUCCUGUUGUUU
.....(((.((((.....))))......(((((((...)))))))..)))((((((((((((((..((..((....))...))..))))))))))).)))-..-................ ( -27.20)
>consensus
UGUUUUUAAAUGUUUCUUACAUACUUUUUGGUUUGACAUAAACCACAGCACCGUAUCGUGUAUCUGGGAGGGUAUUCCAUGCUUUGGUAUGCGAUGCCUGCCC_UCCUUUCCUGCUGUUU
.........((((.....)))).......((((((...))))))(((((((((...)).))....(((.(((((((.(((((....))))).))))))).)))..........))))).. (-24.58 = -25.42 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:04 2006