| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,786,065 – 15,786,170 |
| Length | 105 |
| Max. P | 0.728374 |
| Location | 15,786,065 – 15,786,170 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 90.56 |
| Mean single sequence MFE | -41.07 |
| Consensus MFE | -34.51 |
| Energy contribution | -35.73 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15786065 105 - 27905053 AAGGGGCGGGGCAGGUGUUGUGGCUGCGGCUGCGGCUGUGGAGCUGCCUGUCCUCUCUGAUUUAUGUUGCCAAUCAGGCAUUUUGCUUGCGGUUGCACUCUGUAC- ..((((.(((((((((.(..(((((((....)))))))..)....)))))))))))))......(((.(((...(((((.....))))).))).)))........- ( -40.50) >DroSec_CAF1 7383 105 - 1 AAGGGGCGGGGCAGGUGUUGUGGCUGCGGCUGCGGCUGUGGAGCUGCCUGUCCUCUCUGAUUUAUGUUGCCAAUCAGGCAUUUUGCUUGCGGUUGCACUCUGUAC- ..((((.(((((((((.(..(((((((....)))))))..)....)))))))))))))......(((.(((...(((((.....))))).))).)))........- ( -40.50) >DroSim_CAF1 11806 105 - 1 AAGGGGCGGGGCAGGUGUUGUGGCUGCGGCUGCGGCUGUGGAGCUGCCUGUCCUCUCUGAUUUAUGUUGCCAAUCAGGCAUUUUGCUUGCGGUUGCACUCUGUAC- ..((((.(((((((((.(..(((((((....)))))))..)....)))))))))))))......(((.(((...(((((.....))))).))).)))........- ( -40.50) >DroEre_CAF1 11088 105 - 1 AAGGGGCGGGACAGGUGUUGUGGCUGCUGCUGCGGCUGUGUAGCUGCCUGUCCCCUCUGAUUUAUGUUGCCAAUCAGGCAUUUUGCUUGUGGUUGCACUCUGUAC- ..((((.(((((((((((((..(((((....)))))..)..))).)))))))))))))......(((.((((..(((((.....))))))))).)))........- ( -45.80) >DroYak_CAF1 28570 98 - 1 AAGAGGCGGG-CAGGUGUUGUGGCUGCUGCU------GUGGAGCUGCCUGUCCUCUCAGAUUUAUGUUGCCAAUCAGGCAUUUUGCUUGCGGUUGCACUCUGUAC- .(((((((((-(((.(.(..((((....)))------)..)).))))))).)))))((((....(((.(((...(((((.....))))).))).))).))))...- ( -39.40) >DroAna_CAF1 27200 98 - 1 --GAGGCGGGGCAGGUGUUGCGGCUGC------GGCUGUGGUAGUGCCUGUCCUCCCUGAUUUAUGUUGCCAAUCAGGCAUUUUGCUUGCGGUUGCACUCUGUGGC --.(((.((((((((..((((.((...------....)).))))..)))))))).)))......(((.(((...(((((.....))))).))).)))......... ( -39.70) >consensus AAGGGGCGGGGCAGGUGUUGUGGCUGCGGCUGCGGCUGUGGAGCUGCCUGUCCUCUCUGAUUUAUGUUGCCAAUCAGGCAUUUUGCUUGCGGUUGCACUCUGUAC_ .((((..(((((((((.(..(((((((....)))))))..)....)))))))))..........(((.(((...(((((.....))))).))).)))))))..... (-34.51 = -35.73 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:03 2006