Locus 5994

Sequence ID 3R_DroMel_CAF1
Location 15,785,237 – 15,785,334
Length 97
Max. P 0.957875
window9787

overview

Window 7

Location 15,785,237 – 15,785,334
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 88.75
Mean single sequence MFE -27.58
Consensus MFE -25.71
Energy contribution -26.18
Covariance contribution 0.47
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.93
SVM decision value 1.48
SVM RNA-class probability 0.957875
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15785237 97 - 27905053
AUUAAACUCUUCGUACAUAACAUAAAUGGUUCGCCAUCUGUCACGUUUUGUCGCAUGGACGCACGUGUGAUGAAUACUUGGCAAUUAGGGAGGCCGG
.......(((((.((..........((((....)))).(((((.((((..(((((((......)))))))..)).)).)))))..)).))))).... ( -25.80)
>DroSec_CAF1 6560 97 - 1
AUUAAACUCCCUAUACACAACAUAAAUGGUUCACCAUCUGUCACGUUUAGUCGCAUGGACGCACGUGUGAUGAAUACUUGGCAAUUAGGGAGGCCGG
......(((((((............((((....)))).(((((.((...((((((((......))))))))....)).)))))..)))))))..... ( -31.70)
>DroSim_CAF1 10968 97 - 1
AUUAAACUCCCUAUACACAACAUAAAUGGUUCGCCAUCUGUCACGUUUAGUCGCAUGGACGCACGUGUGAUGAAUACUUGGCAAUUAGGGANNNNNN
.......((((((............((((....)))).(((((.((...((((((((......))))))))....)).)))))..))))))...... ( -27.70)
>DroEre_CAF1 10259 92 - 1
AUUAAACUCCUUGUAC-----AUAAAUGGCUCGCCAUCUGUCACGUUUAGGCGCAUGGACGCACGUGUGAUGAAUACUUGGCAAUUAGGGAGGCCGG
......(((((((...-----....((((....)))).(((((.(((((..((((((......)))))).)))))...)))))..)))))))..... ( -25.90)
>DroYak_CAF1 27740 92 - 1
AUUAAACUCCUUGUAC-----AUAAAUGGUUCGCCAUCUGUCACGUUUAGUCGCAUGGACGCACGUGUGAUGAAUACUUGGCAAUUAGGGAGACCGG
......(((((((...-----....((((....)))).(((((.((...((((((((......))))))))....)).)))))..)))))))..... ( -28.80)
>DroAna_CAF1 26345 92 - 1
AUUAAACUCCUUCUAC-----AUAAAUGGGCCGGCAUCUGUCACGUUUACUCGCAUGGUCGCACGUGUGAUGAAUACUUGGCAAUUAGGGAGGACAG
.......(((((((.(-----(....)).((((((....)))..(((((.(((((((......))))))))))))....))).....)))))))... ( -25.60)
>consensus
AUUAAACUCCUUGUAC_____AUAAAUGGUUCGCCAUCUGUCACGUUUAGUCGCAUGGACGCACGUGUGAUGAAUACUUGGCAAUUAGGGAGGCCGG
......(((((((............((((....)))).(((((.((...((((((((......))))))))....)).)))))..)))))))..... (-25.71 = -26.18 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:02 2006