Locus 5991

Sequence ID 3R_DroMel_CAF1
Location 15,778,705 – 15,778,808
Length 103
Max. P 0.554331
window9784

overview

Window 4

Location 15,778,705 – 15,778,808
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.78
Mean single sequence MFE -28.63
Consensus MFE -18.77
Energy contribution -18.58
Covariance contribution -0.19
Combinations/Pair 1.24
Mean z-score -1.82
Structure conservation index 0.66
SVM decision value 0.04
SVM RNA-class probability 0.554331
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15778705 103 - 27905053
UAUUGUUGUCAGCCCGGGCAAUAAUUGUUCGGGCUCUCAGCACGUCUGCAUAUGUGUUGCAUAUACUUGAG----AAUACUACUGCAUUCCACGCUAUUUGCCAUCG
...(((((..((((((((((.....))))))))))..))))).(..((((...(((((.((......))..----)))))...))))..)...((.....))..... ( -30.70)
>DroSec_CAF1 150 103 - 1
UAUUGUUGUCAGCCUGGGCAAUAAUUGUUCGGGCUCUCAGCACGUCUGCAUAUGUGCUGCAUAUACUUGAG----AGUACCACUGCAUUCCACGCUAUUUGCCAUCG
...(((((..((((((((((.....))))))))))..))))).(..((((...(((((.((......))..----)))))...))))..)...((.....))..... ( -30.10)
>DroSim_CAF1 4317 103 - 1
UAUUGUUGUCAGCCUGGGCAAUAAUUGUUCGGGCUCUCAGCACGUCUGCAUAUGUGCUGCAUAUACUUGAG----AGUACCACUGCAUUCCACGCUAUUUGCCAUCG
...(((((..((((((((((.....))))))))))..))))).(..((((...(((((.((......))..----)))))...))))..)...((.....))..... ( -30.10)
>DroEre_CAF1 4108 92 - 1
UAUUGUUGUCAGCCUGGGCAAUAAUUGUUCGGGCUCUCAGCACGUCUGC-----------AUAUACUUGAG----GAUGCCACUGCAUUCCACGCUAUUUGCCAUCG
...(((((..((((((((((.....))))))))))..)))))((...((-----------(.((((.((.(----(((((....)))))))).).))).)))...)) ( -31.50)
>DroYak_CAF1 21302 103 - 1
UAUUGUUGUCAGCCUAGGCAAUAAUUGUUGGAGCUCUCAGCACGUCUGCAUAUGUGCUGCAUAUACUUGAG----AAUACCACUGCAUUCCACGCUAUUUGCCAUCG
.(((((((((......))))))))).(.((((((...((((((((......))))))))........((.(----(((........)))))).))).....))).). ( -22.00)
>DroAna_CAF1 19918 99 - 1
UAUUGUUGUCGGCCUCGGCAAUAAUUGUUCAGGCCCACAGCGUG--------UGAGUUUUGUAUUCUUGAACUGAAGUUCCCUGGCAUUUAUCGCCAUUUUCCAUUG
....(((((.(((((..(((.....)))..))))).)))))(.(--------(((....(((......((((....))))....)))....)))))........... ( -27.40)
>consensus
UAUUGUUGUCAGCCUGGGCAAUAAUUGUUCGGGCUCUCAGCACGUCUGCAUAUGUGCUGCAUAUACUUGAG____AAUACCACUGCAUUCCACGCUAUUUGCCAUCG
...(((((..((((((((((.....))))))))))..)))))..........................................((.......))............ (-18.77 = -18.58 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:59 2006