Locus 5990

Sequence ID 3R_DroMel_CAF1
Location 15,778,466 – 15,778,579
Length 113
Max. P 0.831653
window9783

overview

Window 3

Location 15,778,466 – 15,778,579
Length 113
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 84.09
Mean single sequence MFE -32.31
Consensus MFE -24.42
Energy contribution -25.78
Covariance contribution 1.36
Combinations/Pair 1.12
Mean z-score -1.95
Structure conservation index 0.76
SVM decision value 0.72
SVM RNA-class probability 0.831653
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15778466 113 - 27905053
UUGCAGUGGCCAUUGCAUUUGGCAUACGUGUAAAUCGUAAAUUUCCGUGUGUGAAAUGAAUGGUAACCAGAAA-CGG----AGACCCGAAAAGGAGCCACACAUCCUCAUCCUUUCAU
.....((.((((((.(((((.(((((((.(.((((.....)))))))))))).))))))))))).))..((((-(((----....)))...((((........)))).....)))).. ( -30.60)
>DroSim_CAF1 4068 113 - 1
UUGCAGUUGCCAUUGCAUUUGGCAUACGUGUAAAUCGUAAAUUUCCGUAUGUGAAAUGAAUGGUAACCAAAAA-CGG----AGACCCGAAAAGGAGCCACACAUCCUCAUCCUUUCAC
.....(((((((((.(((((.(((((((.(.((((.....)))))))))))).))))))))))))))......-(((----....))).((((((..............))))))... ( -33.14)
>DroEre_CAF1 3871 113 - 1
UUGCAGUUGCCAUUGCACUUGGCAUACGUGUAAAUCGUAAAUUUCCGUGUGCGAAAUGAAUGGUAACCAGAAA-CGG----AGCCCCGAAAAGGAGCCACACAUCCUCAUCCUUCCAG
.....(((((((((.((.((.(((((((.(.((((.....)))))))))))).)).)))))))))))......-.((----((....((..((((........))))..)).)))).. ( -31.70)
>DroYak_CAF1 21064 113 - 1
UUGCAGUUGCCAUUGCAUUUGGCAUACGUGUAAAUCGUAAAUUUCCGUGUGUGAAAUGAAUGGUAACCAGAAA-CGG----AGUCCCGAAAGGGAGGCACAAAUUCUCAUCCUUUCAG
.....(((((((((.(((((.(((((((.(.((((.....)))))))))))).))))))))))))))..((((-.((----(...((....))((((.......)))).))))))).. ( -38.80)
>DroAna_CAF1 19537 108 - 1
UUGCAGUUGCCAUUGCAUUUGGCAUACGUGUAAAUCGUAAAUUUCCGUCCACAAAACGAAUGGUAACCGGACAGCGGUAAAAGGUCCGGAGUCGGAUCCCAGA----------UCCAG
((((((((((((.......))))).)).)))))...........((((.(.......).))))...((((((...........))))))....(((((...))----------))).. ( -27.30)
>consensus
UUGCAGUUGCCAUUGCAUUUGGCAUACGUGUAAAUCGUAAAUUUCCGUGUGUGAAAUGAAUGGUAACCAGAAA_CGG____AGACCCGAAAAGGAGCCACACAUCCUCAUCCUUUCAG
.....(((((((((.(((((.(((((((.(.((((.....)))))))))))).)))))))))))))).......(((........)))..(((((..............))))).... (-24.42 = -25.78 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:58 2006