Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,227,145 – 2,227,284 |
Length | 139 |
Max. P | 0.920128 |
Location | 2,227,145 – 2,227,244 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 74.72 |
Mean single sequence MFE | -35.57 |
Consensus MFE | -24.35 |
Energy contribution | -25.55 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.46 |
Mean z-score | -1.51 |
Structure conservation index | 0.68 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2227145 99 - 27905053 GAUUUGGCAUCAGCGACAGGCAAAC--GUGAAUCAUUCCGCUUUGGGACUUGAAAAGUGGGUGGGGAUUGAAGCCCCCGCUCACCUCAUGCUGUUC-UGCUC .....((((.(((((.((((((((.--(((........)))))))...))))....((((((((((........))))))))))....)))))...-)))). ( -33.50) >DroSec_CAF1 16361 100 - 1 GAUUUGGCAUCAGCGGCAGGCACCC--AUGAAUCAUUCCGCUUGGGGGCUUGAAUAGUGGGUGGGUAUUGGAGCCCCCGCCCACCUCAUGCUGUUCAUGCUC .....(((((.((((((((((.(((--(..............)))).)))(((...(((((((((..........))))))))).)))))))))).))))). ( -40.14) >DroSim_CAF1 16603 100 - 1 GAUUUGGCAUCAGCGGCAGGCACCC--AUGAAUCAUUCCGCUUGGGGGCUUGAGAAGUGGGUGGGGAUUGGAGCCCCCGCCCACCUCAUGCUGUUCAUGCUC .....(((((.((((((((((.(((--(..............)))).)))((((..((((((((((........))))))))))))))))))))).))))). ( -47.54) >DroEre_CAF1 16488 98 - 1 GAUUUGGCGUCAGCGGCAGGCACCC--AUGAAUCAUUCCGCUUUGGGGCUUGAAAAGUGGGUGGGGAUUGUG-CCCCCACCCACCUCAUGCUGUU-AUGCUU .....(((((.((((((((((.(((--(...............)))))))(((...((((((((((......-.)))))))))).))))))))))-))))). ( -43.56) >DroYak_CAF1 15369 98 - 1 UAUUUGGUGUCAGCGGCAGGCAUCC--AUGAAUCAUUCCGCUUUGGGGCUUGAAAUAUAGGUGGGGAUUAAA-GCCCCACCCACCUCAUGCUGUU-AUGCUU .....((((((((((.(((((.(((--(...............))))))))).......(((((((......-.))))))).......)))))..-))))). ( -29.96) >DroAna_CAF1 16139 81 - 1 GAUC-AACGUCAGUGGCAGGCGCGCAAAUGAAUCAUUCU---CGGUAGCAG--GAAGGGGGUCUGGACUCUG-CCUGGG--CGACUC------------UUU ....-..((((...(((((((.((..((((...))))..---))))..(((--(.......))))....)))-))..))--))....------------... ( -18.70) >consensus GAUUUGGCAUCAGCGGCAGGCACCC__AUGAAUCAUUCCGCUUGGGGGCUUGAAAAGUGGGUGGGGAUUGAA_CCCCCGCCCACCUCAUGCUGUU_AUGCUC .....(((((.(((((((.................((((.....))))........((((((((((........))))))))))....))))))).))))). (-24.35 = -25.55 + 1.20)
Location | 2,227,183 – 2,227,284 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.70 |
Mean single sequence MFE | -26.37 |
Consensus MFE | -17.01 |
Energy contribution | -19.18 |
Covariance contribution | 2.17 |
Combinations/Pair | 1.24 |
Mean z-score | -1.77 |
Structure conservation index | 0.65 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.628785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2227183 101 + 27905053 CACCCACUUUUCAAGUCCCAAAGCGGAAUGAUUCAC--GUUUGCCUGUCGCUGAUGCCAAAUCGCAUUCGGUUGAUGAAUUUAAAUUGUUCAGAACCGAAUGU ...((.((((.........)))).))...((((..(--(((.((.....)).))))...))))((((((((((..(((((.......))))).)))))))))) ( -24.50) >DroSec_CAF1 16400 101 + 1 CACCCACUAUUCAAGCCCCCAAGCGGAAUGAUUCAU--GGGUGCCUGCCGCUGAUGCCAAAUCGCAUUCGGUUGAUGAAUUUAAAUUGUUCUCAACCGAAUGC ((((((....(((..((.......))..)))....)--))))).........(((.....)))((((((((((((.((((.......)))))))))))))))) ( -34.90) >DroSim_CAF1 16642 101 + 1 CACCCACUUCUCAAGCCCCCAAGCGGAAUGAUUCAU--GGGUGCCUGCCGCUGAUGCCAAAUCGCAUUCGGUUGAUGAAUUUAAAUUGUUCUCAACCGAAUGC ((((((....(((..((.......))..)))....)--))))).........(((.....)))((((((((((((.((((.......)))))))))))))))) ( -34.20) >DroEre_CAF1 16525 101 + 1 CACCCACUUUUCAAGCCCCAAAGCGGAAUGAUUCAU--GGGUGCCUGCCGCUGACGCCAAAUCGCAUUCGGUUGAUGAAUUUAAAUUGUUCUUAACCGAAUGU ((((((....(((..((.......))..)))....)--)))))......((....))......((((((((((((.((((.......)))))))))))))))) ( -30.60) >DroYak_CAF1 15406 101 + 1 CACCUAUAUUUCAAGCCCCAAAGCGGAAUGAUUCAU--GGAUGCCUGCCGCUGACACCAAAUAUCUUUCGGUUAUUGAAUUUAAGUUGUUCUUAACCGAAUCU .....................(((((...((((...--.))).)...)))))..............((((((((..((((.......)))).))))))))... ( -19.20) >DroAna_CAF1 16163 97 + 1 GACCCCCUUC--CUGCUACCG---AGAAUGAUUCAUUUGCGCGCCUGCCACUGACGUU-GAUCGCAUUCGCUUGAUGAAUUUCAAUUGUUUUCAACACAAAGC ..........--........(---(((((((((((((...(((..(((..........-....)))..)))..))))))))......)))))).......... ( -14.84) >consensus CACCCACUUUUCAAGCCCCAAAGCGGAAUGAUUCAU__GGGUGCCUGCCGCUGACGCCAAAUCGCAUUCGGUUGAUGAAUUUAAAUUGUUCUCAACCGAAUGC .....................(((((....((((....)))).....)))))...........((((((((((((.((((.......)))))))))))))))) (-17.01 = -19.18 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:04 2006