| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,778,252 – 15,778,361 |
| Length | 109 |
| Max. P | 0.717731 |
| Location | 15,778,252 – 15,778,361 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.58 |
| Mean single sequence MFE | -30.88 |
| Consensus MFE | -18.86 |
| Energy contribution | -19.18 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15778252 109 - 27905053 AAAGUCACUUCCUCGGUAAUGGAAUAAAUAUCCGUAAGGACCAUCUUUCCGUGCCACGUCGCACACCCAUA-CACACGU--------GUA--UGGGAAUUGUCCAGCAUUUUGCGGCUAU ..............((((.(((((......(((....)))......)))))))))..((((((..((((((-((....)--------)))--))))...((.....))...))))))... ( -36.20) >DroSim_CAF1 3869 109 - 1 AAAGUCACUUCCUCGGUAAUGGAAUAAAUAUCCGUAAGGACCAUCUUUCCGUGCCACGUUGCACACCCAUA-CACACGU--------GUA--UGUGAAUUGUCCAGCAUUUUGCGGCUAU ..((((........((((.(((((......(((....)))......)))))))))..((((.(((.(((((-((....)--------)))--)).)...))).)))).......)))).. ( -30.50) >DroEre_CAF1 3683 119 - 1 AAAGUCACUUCCUCGGUAAUGGAAUAAAUAUCCGUGAGGACCAUCUUUCCGUGCCCCGUCGCACUCACAUG-CACACGUAUAGUGCCGUAUAUGGGAAUUGUCCAGCAUUUUGCGGCUAU ..............((((.(((((......(((....)))......)))))))))..((((((.....(((-(...((((((......))))))(((....))).))))..))))))... ( -32.80) >DroYak_CAF1 20885 110 - 1 AAAGUCACUUCCUCGGUAAUGGAAUAAAUAUCCGUAAGGACCAUCUUUCCGUGCCCCGUCGCACACACAUA-CACAUGG--------GUAUAUG-GAAUUGUCCAGCAUUCUGCGGCUAU ..............((((.(((((......(((....)))......)))))))))..((((((.....(((-(......--------)))).((-((....))))......))))))... ( -27.50) >DroAna_CAF1 19362 96 - 1 AAAGUCGCUUCCUGGGUAAUGGAAUAAAUAUCCGUGAGGACCAUCUUUUUG------GAAGCAGACACAUAUCACCCAU------------------AUUGUCCAGCAUUUUGUGGCUAU ...(((((((((..((..((((........(((....)))))))..))..)------))))).))).........((((------------------(.((.....))...))))).... ( -27.40) >consensus AAAGUCACUUCCUCGGUAAUGGAAUAAAUAUCCGUAAGGACCAUCUUUCCGUGCCACGUCGCACACACAUA_CACACGU________GUA__UG_GAAUUGUCCAGCAUUUUGCGGCUAU ..((((........((((((((((......(((....)))......))))((((......)))).................................)))).)).((.....)))))).. (-18.86 = -19.18 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:57 2006