| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,775,538 – 15,775,640 |
| Length | 102 |
| Max. P | 0.500000 |
| Location | 15,775,538 – 15,775,640 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 73.11 |
| Mean single sequence MFE | -25.95 |
| Consensus MFE | -8.24 |
| Energy contribution | -9.80 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.89 |
| Structure conservation index | 0.32 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15775538 102 + 27905053 UCCUUUUUGGAGAGGAGAACUGUGAUUCUGUGUAUAUUUGCUUGUAUACUGUUUCCCAGUAGCCAAGCCA---GUGUGCACUUAUUUUUUUUUAUUAU--UACU-UUU ((((((....)))))).....(((((...(((((((((.(((((..(((((.....)))))..))))).)---))))))))...............))--))).-... ( -28.27) >DroSim_CAF1 1249 100 + 1 UCCUUUUUGGCGAGGCGAACUGUGAUUCUGUGUAUAUUUGCUUGUACACAGUUUCCCAGUGGCCAAGCCA---GUGUGCACUUAUUUU--UUUAUUAU--UACU-UUU ......(((((..(((..((((.((..(((((((((......)))))))))..)).)))).)))..))))---)..............--........--....-... ( -32.90) >DroEre_CAF1 1193 93 + 1 UCCUUUUUGGAGAGGCGAACUGUGAUUCUGUGUACAUUUGCUUGUAUACUGCUUCCCAGUAG-----CCA---GUGUGCACU--UUUU--UUGAUUAU--UACU-UUU (((.....)))..(((..((((.((..(.(((((((......))))))).)..)).)))).)-----)).---.........--....--........--....-... ( -22.20) >DroAna_CAF1 17262 90 + 1 UGCCUUU--GAGGAGAAAACUGUGAUUCAGCAUAUAUUUGCCUGU--------UGCCAG------AGUCGGUGGAGUGCAGUUGUUUU--UGUAGUAUACUUCUUCUG .......--.(((((((.((((..(..((((.......(((((.(--------..((..------....))..))).)))))))...)--..))))....))))))). ( -20.41) >consensus UCCUUUUUGGAGAGGAGAACUGUGAUUCUGUGUAUAUUUGCUUGUAUACUGUUUCCCAGUAG___AGCCA___GUGUGCACUUAUUUU__UUUAUUAU__UACU_UUU .((((......))))...((((.((..(.(((((((......))))))).)..)).))))................................................ ( -8.24 = -9.80 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:53 2006