Locus 5984

Sequence ID 3R_DroMel_CAF1
Location 15,770,539 – 15,770,659
Length 120
Max. P 0.960196
window9772

overview

Window 2

Location 15,770,539 – 15,770,659
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -47.50
Consensus MFE -44.22
Energy contribution -44.97
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.51
Structure conservation index 0.93
SVM decision value 1.51
SVM RNA-class probability 0.960196
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15770539 120 - 27905053
GAAUUAGGUGUGGGAUUGGCAACGGGAAUGGGUUCGCUCGGGUGGGAUCUGGGUCUUUCCUUUCGCAUUAGGCAUCAUCAAGGUCCCCCAUUCGAAUGCCCAUUCACCGCAUCCUCAUCA
......((((.(((((.(....)(((((((((((((....((.(((((((.(((..(.(((........))).)..))).)))))))))...)))..)))))))).))..))))))))). ( -46.00)
>DroSec_CAF1 27685 120 - 1
GAAUUGGGUGUGGGUUUGGCAACGGGAAUGGGUUCGCUCGGGUGGGAUCUGGGUCUUUCCUUUCGCAUUAGGCAUCAUCAAGGUCCCCCAUUCGAAUGCCCAUUCACCGCAUCCUCAUCA
((...((((((((..(((....)))(((((((((((....((.(((((((.(((..(.(((........))).)..))).)))))))))...)))..)))))))).))))))))...)). ( -49.60)
>DroSim_CAF1 27689 120 - 1
GAAUUGGGCGUGGGAUUGGCAACGGGAAUGGGUUCGCUCGGGUGGGAUCUGGGUCUUUCCUUUCGCAUUAGGCAUCAUCAAGGUCCCCCAUUCGAAUGCCCAUUCACCGCAUCCUCAUCA
((...((..((((..(((....)))(((((((((((....((.(((((((.(((..(.(((........))).)..))).)))))))))...)))..)))))))).))))..))...)). ( -45.30)
>DroEre_CAF1 30212 119 - 1
GAAUUGGGUGUGGGA-UGGAAAGGGGAAUGGGUUCGUUCGGGUGGGAUCCGGGUCUUUCCUUUCGCAUUAGGCAUCAUCAAGGUCCCCCAUUCGAAUGCCCAUUCACCGCAUCCUCAUCA
......((((.((((-((....((.((((((((..(((((((((((....((..(((.......((.....))......)))..))))))))))))))))))))).)).)))))))))). ( -49.12)
>consensus
GAAUUGGGUGUGGGAUUGGCAACGGGAAUGGGUUCGCUCGGGUGGGAUCUGGGUCUUUCCUUUCGCAUUAGGCAUCAUCAAGGUCCCCCAUUCGAAUGCCCAUUCACCGCAUCCUCAUCA
((...((((((((...((....)).((((((((....(((((((((....((..(((.......((.....))......)))..)))))))))))..)))))))).))))))))...)). (-44.22 = -44.97 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:47 2006