Locus 5982

Sequence ID 3R_DroMel_CAF1
Location 15,769,450 – 15,769,570
Length 120
Max. P 0.890882
window9770

overview

Window 0

Location 15,769,450 – 15,769,570
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.64
Mean single sequence MFE -29.12
Consensus MFE -21.30
Energy contribution -21.55
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.32
Structure conservation index 0.73
SVM decision value 0.96
SVM RNA-class probability 0.890882
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15769450 120 - 27905053
UGGCCAAUCCAAGCCCCUUCAUAUAUUAUUUCAUUCGCCACGGCUUCUUGAGAGUUAUGUCAGCAAUGGGGCCCCAAUCUCACAUCACAUCAUCGUCUGCGAAAAGGCCAAACUAAAAAU
(((((.......(((((...(((((...(((((...((....))....)))))..))))).......)))))....................(((....)))...))))).......... ( -28.80)
>DroSec_CAF1 26622 120 - 1
UGGCCAAUCCAAGCCCCUUCAUAUUUCAUUUCAUUCGCCACGGCUUCUUGAGAGUUAUGGCAGCAUCGGGGCCCCAAUCUCACAUCACAUCAUCGUCUACGAAAGGGCCAAACUAAAAAU
(((((.......(((((...................((((..((((.....))))..)))).(...))))))....................(((....)))...))))).......... ( -30.20)
>DroSim_CAF1 26601 120 - 1
UGGCCAAUCCAAGCCCCUUCAUAUUUCAUUUCAUUCGCCACGGCUUCUUGAGAGUUAUGGCAGCAUUGCUGCCCCAAUCUCACAUCACAUCAUCGUCUGCGAAAGGGCCAAACUAAAAAU
(((((..((((..(......................((....))....(((((.....((((((...))))))....)))))............)..)).))...))))).......... ( -29.70)
>DroEre_CAF1 29153 103 - 1
UGGCCAAUCC-----------------AUUUCAUUCGCCACGGCUUCUUCAGAGUUAUGGCAGCAUUGGGGCCCAAAUCUCACAGCACAUCAUCGUCUGCGAAAAGGCCAACCUAAAAAU
(((((.....-----------------.........((((..((((.....))))..)))).((..(((((......)))))..))......(((....)))...))))).......... ( -27.80)
>consensus
UGGCCAAUCCAAGCCCCUUCAUAUUUCAUUUCAUUCGCCACGGCUUCUUGAGAGUUAUGGCAGCAUUGGGGCCCCAAUCUCACAUCACAUCAUCGUCUGCGAAAAGGCCAAACUAAAAAU
(((((...............................((((..((((.....))))..)))).((......))....................(((....)))...))))).......... (-21.30 = -21.55 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:45 2006