Locus 5980

Sequence ID 3R_DroMel_CAF1
Location 15,768,919 – 15,769,039
Length 120
Max. P 0.584319
window9767

overview

Window 7

Location 15,768,919 – 15,769,039
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.72
Mean single sequence MFE -36.00
Consensus MFE -27.61
Energy contribution -26.62
Covariance contribution -1.00
Combinations/Pair 1.24
Mean z-score -1.54
Structure conservation index 0.77
SVM decision value 0.10
SVM RNA-class probability 0.584319
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15768919 120 + 27905053
UGUAGGUUUAGGCCAAGUCACGCUAUUAGCGAGCAAUGUAAAUAUUUUAUUGCCUGCUUUUGUGCGCUGCUCAUUUGAUCCUGCCAUUUGCUGGCCGGGGGCACUUGUUUAACUUGCUCC
.(((((((.(((((.(((..(((((..((((.((((((.........)))))).))))..)).)))..))).......(((.((((.....)))).)))))).)).....)))))))... ( -36.60)
>DroSec_CAF1 26073 120 + 1
UGUGGGUUUAGGCCAAGUCACGCUAUUAGCGAGCAAUGUAAAUAUUUUAUUGCCUGCUUUUGUGCGCUGCUCAUUUGCUCCUGCCAAUUGCCGACCGAGGGCACUUGUUUAACUUGCUCC
.(..((((((((.((((((((((((..((((.((((((.........)))))).))))..)).))).))...)))))..)))).(((.((((.......)))).)))...))))..)... ( -31.70)
>DroSim_CAF1 26053 120 + 1
UGUGGGUUUAGGCCAAGUCACGCUAUUAGCGAGCAAUGUAAAUAUUUUAUUGCCUGCUUUUGUGCGCUGCUCAUUUGCUCCUGCCAAUUGCUGACCGCGGGCACUUGUUUAACUUGCUGC
.(..((((.((((.(((((.(((..(((((((((((((.........))))))......(((.(((..((......))...)))))))))))))..))).).))))))))))))..)... ( -33.10)
>DroEre_CAF1 28638 120 + 1
UGUGGGUUUAGGCCCGGUAACGCCAUUGGCCAGCAGAGUAAAUAUUUUAUUGCCUGCUUUUGAGCGUUGCUCAUUCGCUCCUGCCAAUUGCUUCCCCUGGGCACUUGCCUAAUUUGCUCC
..(((((..((((((((....((.((((((.(((((.((((........)))))))))...(((((.........)))))..)))))).)).....)))))).)).)))))......... ( -42.60)
>consensus
UGUGGGUUUAGGCCAAGUCACGCUAUUAGCGAGCAAUGUAAAUAUUUUAUUGCCUGCUUUUGUGCGCUGCUCAUUUGCUCCUGCCAAUUGCUGACCGAGGGCACUUGUUUAACUUGCUCC
.(((((((.((((..(((..(((((..((((.((((((.........)))))).))))..)).)))..)))..........((((..............))))...)))))))))))... (-27.61 = -26.62 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:42 2006