Locus 598

Sequence ID 3R_DroMel_CAF1
Location 2,219,487 – 2,219,580
Length 93
Max. P 0.623059
window950

overview

Window 0

Location 2,219,487 – 2,219,580
Length 93
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 89.57
Mean single sequence MFE -40.72
Consensus MFE -32.39
Energy contribution -33.28
Covariance contribution 0.89
Combinations/Pair 1.14
Mean z-score -2.33
Structure conservation index 0.80
SVM decision value 0.18
SVM RNA-class probability 0.623059
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2219487 93 + 27905053
ACUGGCGCGCAGAUUCGAGCUGGAACCGCGGGAUGGACGCAGGGGCUUCAGCGUUACGAAGUCCCGAUUCUGGUUCGGAUUAGGGGC---CGCAUU
...(((.(.(.(((((((((..(((.((((.......))).((((((((........))))))))).)))..))))))))).).)))---)..... ( -43.50)
>DroSec_CAF1 8391 93 + 1
ACUGGCGCGCAGAUUCGAGCUGGAACCGCGGGAUGGACGCAGGGGCUUCAGCGUUAGGAAGUCCCGAUUCUGGUUCGGAUUAGGGGC---CGCAUU
...(((.(.(.(((((((((..(((.((((.......))).((((((((........))))))))).)))..))))))))).).)))---)..... ( -43.40)
>DroSim_CAF1 8485 93 + 1
ACUGGCGCGCAGAUUCGAGCUGGAACCGCGGGAUGGACGCAGGGGCUUCAGCGUUAGGAAGUCCCGAUUCUGGUUCGGAUUAGGGGC---CGCAUU
...(((.(.(.(((((((((..(((.((((.......))).((((((((........))))))))).)))..))))))))).).)))---)..... ( -43.40)
>DroEre_CAF1 8464 93 + 1
ACUGGCGCGCAGAUUCGAGCUGGAACCGCGGGAAGGACGCAGGGGCUUCAGCGUUAGGAAGUCCCGAUUCUGGUUCGGAUUAGGGGC---CGCAUU
...(((.(.(.(((((((((..(((.((((.......))).((((((((........))))))))).)))..))))))))).).)))---)..... ( -43.40)
>DroYak_CAF1 7856 96 + 1
ACUGGCGCGCAGAUUCGAGCUGGAACCGCGGGAUGGACGCAGUGGCUUCAGCGUUAGGAAGUCACGAUUCUGGUUCGGAUUAGGGGCCGCCGCAUU
...((((.((.(((((((((..(((.((((.......))).((((((((........))))))))).)))..)))))))))....))))))..... ( -43.40)
>DroAna_CAF1 9606 87 + 1
ACUGGCGCGCAGAUUGGAGCUAGAACCGCGGGAAGAUCGCAGCGGCUGGAGAGUCAGUAGAUCCCGAUUG------GGGUGAGGAGC---CGCAUU
.(((((.(........).)))))....((((.....)))).((((((.(.....).....(((((....)------))))....)))---)))... ( -27.20)
>consensus
ACUGGCGCGCAGAUUCGAGCUGGAACCGCGGGAUGGACGCAGGGGCUUCAGCGUUAGGAAGUCCCGAUUCUGGUUCGGAUUAGGGGC___CGCAUU
....(((.((.(((((((((..(((.((((.......))).((((((((........))))))))).)))..)))))))))....))...)))... (-32.39 = -33.28 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:02 2006