Locus 5978

Sequence ID 3R_DroMel_CAF1
Location 15,768,488 – 15,768,608
Length 120
Max. P 0.585696
window9763

overview

Window 3

Location 15,768,488 – 15,768,608
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.28
Mean single sequence MFE -37.35
Consensus MFE -26.64
Energy contribution -27.95
Covariance contribution 1.31
Combinations/Pair 1.09
Mean z-score -1.54
Structure conservation index 0.71
SVM decision value 0.10
SVM RNA-class probability 0.585696
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15768488 120 - 27905053
GCUUGAAUAGCCCUUUGGCGGGUAGCUUUCUAUAUCUGUCUGCGGAUAUUUGUACGUCCGAGUGGCUGUUGACCAUUGGAAUGGAUUGGAGUGGAGUGGAUGCCCGCGGCAUUUGUAGCU
((((((((.(((.....(((((((.((((((((.((.((((.(((((........)))))((((((....).))))).....)))).)).)))))).)).))))))))))))))).))). ( -39.20)
>DroSec_CAF1 25646 120 - 1
GCUUGAAUGGCCCUUUGGCGGGUAACUUUCUAUAUCUGUCUGCGGAUAUUUGUACGUCCGAGUGGAUGUUGACCAUUUUAAUGGAUUGGAGUGGAGUGGAUGCCCGCGGCAUUUUUAGCU
(((.(((((.((....((((((((........)))))))).((((.((((..(((((((....))))))...(((((((((....))))))))).)..)))).)))))))))))..))). ( -41.30)
>DroSim_CAF1 25626 120 - 1
GCUUGAAUGGCCCUUUGGCGGGUAACUUUCUAUAUCUGUCUGCGGAUAUUUGUACGUCCGAGUGGCUGUUGACCAUUGGAAUGGAUUGGAGUGGAGUGGAUGCCCGCGGCAUUUGUAGCU
(((((((((.((.....(((((((.((((((((.((.((((.(((((........)))))((((((....).))))).....)))).)).)))))).)).))))))))))))))).))). ( -39.20)
>DroEre_CAF1 28226 100 - 1
GCUUGAAUAGCCCUUUGGCGGAACGCUUUCUAUAUCUGUCUGCGGAUAUUUGUACGUCCGAGUGGCUGUUCACCAUU--------------------GGAUGCCCACCAAAUUUUUAGUU
...((((((((((((.((((....((.....(((((((....)))))))..)).)))).))).)))))))))...((--------------------((.......)))).......... ( -29.70)
>consensus
GCUUGAAUAGCCCUUUGGCGGGUAACUUUCUAUAUCUGUCUGCGGAUAUUUGUACGUCCGAGUGGCUGUUGACCAUUGGAAUGGAUUGGAGUGGAGUGGAUGCCCGCGGCAUUUGUAGCU
(((..((((((((((.((((....((.....(((((((....)))))))..)).)))).))).)))))))..................(((((..((((....))))..)))))..))). (-26.64 = -27.95 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:38 2006