Locus 5977

Sequence ID 3R_DroMel_CAF1
Location 15,768,043 – 15,768,137
Length 94
Max. P 0.766493
window9762

overview

Window 2

Location 15,768,043 – 15,768,137
Length 94
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.64
Mean single sequence MFE -27.47
Consensus MFE -20.27
Energy contribution -20.46
Covariance contribution 0.19
Combinations/Pair 1.17
Mean z-score -1.78
Structure conservation index 0.74
SVM decision value 0.52
SVM RNA-class probability 0.766493
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15768043 94 + 27905053
ACUUACCUACGUUCACUCAACGUGGA--------------------------AUAGCGUGAAAAGCUUCAGAGUUGUUUGGCGAUUCAACAUGGACGUUGUGUGAGAUGAGAAAUAAAAC
.((((((.(((((((.....(((.((--------------------------(((((.((((....))))..))))))).)))........))))))).).))))).............. ( -25.02)
>DroSec_CAF1 25202 120 + 1
ACUCACCUACGUUCAAUCAACGGGGAAGCUAAGGAACUACCCAUCAGAAUAAAUAGCGAAUAAAACUUCAAAGUUGUUUGGCGAUUCAACAUGGACGUUGUGUGAGAUGAGAAAUAAAAC
.((((((.(((((((.......(((.((........)).)))....((((.....((.((...((((....))))..)).)).))))....))))))).).))))).............. ( -28.40)
>DroSim_CAF1 25182 120 + 1
ACUCACCUACGUUCACUCAACGGGGAAGCUAAGGAACUACCCAUCAGAAUAAAUAGCGAAAAAAGCUUCAAAGUUGUUUGGCGAUUCAACAUGGACGUUGUGUGAGAUGAGAAAUAAAAC
.((((((.(((((((.......(((.((........)).)))....((((.....((.(((..((((....)))).))).)).))))....))))))).).))))).............. ( -27.70)
>DroEre_CAF1 27769 120 + 1
GCUCACCUACGUUCACUAAACGGGUAAGCUAAGGAACUACCCAUUAGAACAAAUAGCGAAAAAAACUUCAAAGUUGUUUGGCGAUGCAACAUGGACGUUGUGUGGGAUAAGAAAUAAAAC
.((((((.(((((((((((..(((((..(....)...))))).))))..((((((((...............))))))))...........))))))).).))))).............. ( -28.76)
>consensus
ACUCACCUACGUUCACUCAACGGGGAAGCUAAGGAACUACCCAUCAGAAUAAAUAGCGAAAAAAACUUCAAAGUUGUUUGGCGAUUCAACAUGGACGUUGUGUGAGAUGAGAAAUAAAAC
.((((((.(((((((......(((...............))).............((.((...((((....))))..)).)).........))))))).).))))).............. (-20.27 = -20.46 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:37 2006