Locus 5974

Sequence ID 3R_DroMel_CAF1
Location 15,764,661 – 15,764,774
Length 113
Max. P 0.645296
window9754

overview

Window 4

Location 15,764,661 – 15,764,774
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.32
Mean single sequence MFE -25.83
Consensus MFE -15.06
Energy contribution -17.10
Covariance contribution 2.04
Combinations/Pair 1.16
Mean z-score -2.03
Structure conservation index 0.58
SVM decision value 0.23
SVM RNA-class probability 0.645296
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15764661 113 - 27905053
AUCCACCACCAUUGAUAUGAUAGCCAGUAAAUAUUAAAUAUCGUCAAACAGCUCAUAUCCAAUAUAAUUGUUGUGAGU-----GGAAUGGGGAUAAACCCAUGU--UCGAUAUUAAUAAG
.((((((((....(((((((..((..........................))))))))).((((....))))))).))-----)))(((((......)))))..--.............. ( -21.97)
>DroSec_CAF1 21851 118 - 1
AUCCACCACCAUUGAUAUGAUGGCCAGUAAAUAUUAAAUAUCUUCAAACAGCUCAUAUCCAAUAUAAUUGUUGUGAGUGCAGUGAAAUGGGGAUAAACCCAUGU--UCGAUAUUAAUAAG
........(((((.....)))))........((((((.((((((((....(((((((..((((...)))).)))))))....))))(((((......)))))..--..)))))))))).. ( -27.40)
>DroSim_CAF1 21831 118 - 1
AUCCACCACCAUUGAUAUGAUGGCCAGUAAAUAUUAAAUAUCUUCAAACAGCUCAUAUCCAAUAUAAUUGUUGUGAGUGCAGUGAAAUGGGGAUAAACCCAUGU--UCGAUAUUAAUAAG
........(((((.....)))))........((((((.((((((((....(((((((..((((...)))).)))))))....))))(((((......)))))..--..)))))))))).. ( -27.40)
>DroEre_CAF1 24000 118 - 1
AUCCACGUCCAUUGAAAUAAUGGCAAGUAAAUAUUGAAUAUCUUCAAACAGCUCAUAUCCAAUAUAAUUGUUGUGAGUGCAGUGAAAUGGGGAUAAACCCAUGU--UCGAUAUUAAUAAG
......(.((((((...))))))).....((((((((((...((((....(((((((..((((...)))).)))))))....))))(((((......)))))))--))))))))...... ( -30.40)
>DroPer_CAF1 22386 102 - 1
CUGCUCUGGCAUAU---UUAUGGCCAGUUAAUAUUGAAAUUCUUCA---------------ACUUAAUUGUUGUGAGUGCAGUGAAAGGGGGAUAAAAGCUGGUUCUCGAUAUUAAUAAG
.....(((((....---.....)))))((((((((((.((((..((---------------((......)))).)))).((((...............))))....)))))))))).... ( -21.96)
>consensus
AUCCACCACCAUUGAUAUGAUGGCCAGUAAAUAUUAAAUAUCUUCAAACAGCUCAUAUCCAAUAUAAUUGUUGUGAGUGCAGUGAAAUGGGGAUAAACCCAUGU__UCGAUAUUAAUAAG
........(((((.....)))))........((((((.((((((((....(((((((..............)))))))....))))(((((......)))))......)))))))))).. (-15.06 = -17.10 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:30 2006