Locus 5972

Sequence ID 3R_DroMel_CAF1
Location 15,762,973 – 15,763,093
Length 120
Max. P 0.617996
window9751

overview

Window 1

Location 15,762,973 – 15,763,093
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.08
Mean single sequence MFE -43.98
Consensus MFE -34.12
Energy contribution -35.40
Covariance contribution 1.28
Combinations/Pair 1.16
Mean z-score -1.55
Structure conservation index 0.78
SVM decision value 0.17
SVM RNA-class probability 0.617996
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15762973 120 + 27905053
ACCGCUGAAAGAGCAAAGUCUUGGCAAAGGCAUACAGCUCAAUGUCCAGACUGUUUAGCUUCUCGAUGCGACGCUUCUGGUCGGGUCGAAGAUUCUGGACAGCAGUCGCCGAGAUUGUGG
.(((((.....)))..(((((((((...(((((........)))))..(.((((((((..(((((((.((((.(....))))).)))).)))..)))))))))....)))))))))..)) ( -45.60)
>DroSec_CAF1 20175 120 + 1
ACCGCUGAAAGAGCAAAGUCUUGGCAAAGGCGUACAGCUCGAUAUCCAGACUGUUGAGCUUUUCGAUGCGACGCUUCUGGUCGGGUCGAAGAUUCUGGACAGCAGUCGCCGAGAUGGUGG
((((((.....)))...((((((((...(((.....))).........((((((((((.((((((((.((((.(....))))).))))))))..))...))))))))))))))))))).. ( -47.20)
>DroSim_CAF1 20153 120 + 1
ACCGCUGAAAGAGCAAAGUCUUGGCAAAGGCGUACAGCUCGAUGUCCAGACUGUUGAGCUUCUCGAUGCGACGCUUCUGGUCGGGUCGAAGAUUCUGGACAGCAGUCGCCGAGAUUGUGG
.(((((.....)))..(((((((((...(((((........)))))..((((((((((..(((((((.((((.(....))))).)))).)))..))...)))))))))))))))))..)) ( -46.80)
>DroEre_CAF1 22359 120 + 1
ACCGCUGAAAGAGCAAUGUCUUGGCAAAGGCGUACAGCUCGAUGUCCAGGCCGUUGAGCUUCUCGAUGCGACGCUUUUGGUCCGGUCGCAGAUUCUGGACAGCAGUGGCCGAGAUUGUGG
.((((((...((((.(((((((....)))))))...))))..((((((((..((((((...))))))(((((((.....))...)))))....)))))))).))))))............ ( -43.40)
>DroPer_CAF1 20643 120 + 1
ACCGUUGAAACAGCAAAUUCUUGGCAAAGACAUACAGCUCUAUGUCCAGGCCGUUGAGCUUCUCGAUGCGACGCUUCUGGUCCGCUCGCAGAUUGGAUACGGCUGUCGCCGAAAUGGUAG
((((((................(((...((((((......))))))...)))((((((...))))))((((((((((..(((.(....).)))..))...))).)))))...)))))).. ( -36.90)
>consensus
ACCGCUGAAAGAGCAAAGUCUUGGCAAAGGCGUACAGCUCGAUGUCCAGACUGUUGAGCUUCUCGAUGCGACGCUUCUGGUCGGGUCGAAGAUUCUGGACAGCAGUCGCCGAGAUUGUGG
...(((.....)))...((((((((...(((((........)))))..((((((((((..(((((((.((((.(....))))).)))).)))..))...))))))))))))))))..... (-34.12 = -35.40 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:27 2006