Locus 5969

Sequence ID 3R_DroMel_CAF1
Location 15,759,282 – 15,759,402
Length 120
Max. P 0.885675
window9741

overview

Window 1

Location 15,759,282 – 15,759,402
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.42
Mean single sequence MFE -46.08
Consensus MFE -38.46
Energy contribution -39.42
Covariance contribution 0.96
Combinations/Pair 1.12
Mean z-score -1.65
Structure conservation index 0.83
SVM decision value 0.94
SVM RNA-class probability 0.885675
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15759282 120 - 27905053
GAACAGGAUGCCCUGUCCUACGGACAGGAGGCCAAGAGCUGCCAGGCGGAACUGGAGUGUCUGAAGGUGGAGCGCAACACCCUGAAGAAUGACUUGGCCAACAAGUGCACUCUGAUCCGC
((.(((..((((((((((...))))))).(((((((.(((.((((......))))))).(((...((((........))))....)))....))))))).......)))..))).))... ( -49.30)
>DroSec_CAF1 16478 120 - 1
GAACAGGAUGCCCUGUCCUACGGACAGGAGGCCAAGAGCUGCCAGGCGGAACUGGAGUGUCUGAAGGUGGAGCGCAACACCCUGAAGAAUGACUUGGCCAACAAGUGCACUCUGAUCCGC
((.(((..((((((((((...))))))).(((((((.(((.((((......))))))).(((...((((........))))....)))....))))))).......)))..))).))... ( -49.30)
>DroSim_CAF1 16436 120 - 1
GAACAGGAUGCCCUGUCCUACGGACAGGAGGCCAAGAGCUGCCAGGCGGAACUGGAGUGUCUGAAGGUGGAGCGCAACACCCUGAAGAACGACUUGGCCAACAAGUGCACUCUGAUCCGC
((.(((..((((((((((...))))))).(((((((.(((.((((......))))))).(((...((((........))))....)))....))))))).......)))..))).))... ( -49.30)
>DroEre_CAF1 18878 120 - 1
GAACAGGACGCACUGUCCUACGGACAGGAGGCCAAGAGCUGCCAGGCGGAACUGGAGUGCCUGAAGGUGGAGCGCAACACCCUGAAGAACGACUUGGCCAACAAGUGCACGCUGAUCCGC
((.(((...(((((((((...)))).(..(((((((.((..((((......))))...))((...((((........))))....)).....)))))))..).)))))...))).))... ( -42.20)
>DroPer_CAF1 16620 120 - 1
GAGCUGGAUGCCCUGGCCUAUGCCCAGGAGGCCAAGAGCAGCCACUCCGAGCAGGAGUGCCUCCGUGUGGAGCGCAACACUCUGAAGAACGAUCUGGCCAACAAGUGCACCCUGAUCCGC
((...((.((((((((.......))))).((((.((((.....(((((.....)))))((((((....)))).))....))))..(((....))))))).......))).))...))... ( -40.30)
>consensus
GAACAGGAUGCCCUGUCCUACGGACAGGAGGCCAAGAGCUGCCAGGCGGAACUGGAGUGUCUGAAGGUGGAGCGCAACACCCUGAAGAACGACUUGGCCAACAAGUGCACUCUGAUCCGC
((.((((.((((((((((...))))))).(((((((.((..((((......))))...)).....((((........))))...........))))))).......))).)))).))... (-38.46 = -39.42 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:17 2006