Locus 5967

Sequence ID 3R_DroMel_CAF1
Location 15,752,122 – 15,752,218
Length 96
Max. P 0.745039
window9734

overview

Window 4

Location 15,752,122 – 15,752,218
Length 96
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 79.04
Mean single sequence MFE -31.13
Consensus MFE -18.54
Energy contribution -20.10
Covariance contribution 1.56
Combinations/Pair 1.24
Mean z-score -1.81
Structure conservation index 0.60
SVM decision value 0.46
SVM RNA-class probability 0.745039
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15752122 96 - 27905053
G--AUGGAAGUGGAACAGAGUGGUCCGGAAGCUCACAGAGCACACAGCUCGGAAACCAUUUGAACAGCUUUCG---CGUAGCCCGAAAGUAGGCUUUGAUC
.--..((((((......((((((((((....).....((((.....)))))))..)))))).....)))))).---((.(((((....)..)))).))... ( -27.30)
>DroSec_CAF1 9310 95 - 1
G--UUGGAAGUGGAUCAGAGUGGUCCGGAAGCUCACAGAGCGCACAGCUCGGAAACCAUUUG-AGAGCUUUUG---CGGAGCCCGAAAGUAGGCUUUGAUC
.--.........((((((((((((((((((((((.((((((.....))))(....)....))-.)))))))..---)))).))(....)...))))))))) ( -35.40)
>DroSim_CAF1 9265 96 - 1
G--AUGGAAGUGGAUCAGAGUGGUCCGGAAGCUCACAGAGCGCACAGCUCGGAAACCAUUUGAAGAGCUUUUG---CGGAGCCCGAAAGUAGGCUUUGAUC
.--.........((((((((((((((((((((((...((((.....))))(....)........)))))))..---)))).))(....)...))))))))) ( -35.10)
>DroEre_CAF1 11830 96 - 1
G--CUGGAAGUGGACCUGAAUGGUCAGGAAGCUCACAGAGCGCACAGCUCGGAAACCAUUUGAAGAGCUUUUG---CGGAGCCCGAAAGUAGGCUUUGUUC
.--.........((((.....)))).((((((((...((((.....))))(....)........))))))))(---((((((((....)..)))))))).. ( -34.90)
>DroYak_CAF1 9603 96 - 1
A--UUGGCAGUGGAUCGGAAUUGUGGGGAAGCUCACAGAGCGCACAGCUCGGAAACCAUUUGAAGAGCUUUUG---CAGAGCCCGAAAGUAGGCUUUGUUC
.--.(.(((((........))))).)((((((((...((((.....))))(....)........))))))))(---((((((((....)..)))))))).. ( -33.10)
>DroMoj_CAF1 11562 92 - 1
CAGCAUGAACGAGAUC--AGUG---ACGUGGCUAGCAAAUCGCAGAGCACGCAAACCAUUUGAA----UUUUAUGUCACUGCCUAAAAGUAGGCAACACUU
..........(((...--((((---((((((((.((.....))..)))...(((.....)))..----...)))))))))(((((....)))))....))) ( -21.00)
>consensus
G__AUGGAAGUGGAUCAGAGUGGUCCGGAAGCUCACAGAGCGCACAGCUCGGAAACCAUUUGAAGAGCUUUUG___CGGAGCCCGAAAGUAGGCUUUGAUC
..........................((((((((...((((.....))))(....)........))))))))....((((((((....)..)))))))... (-18.54 = -20.10 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:11 2006