Locus 5961

Sequence ID 3R_DroMel_CAF1
Location 15,737,721 – 15,737,829
Length 108
Max. P 0.694144
window9724

overview

Window 4

Location 15,737,721 – 15,737,829
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 90.19
Mean single sequence MFE -23.64
Consensus MFE -17.96
Energy contribution -17.88
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -1.73
Structure conservation index 0.76
SVM decision value 0.34
SVM RNA-class probability 0.694144
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15737721 108 + 27905053
UGUUUCUUUACGUACCUAGAAGCUGUUAAAGUGCAAUAUUAGUGGCAAUAUUUUGUUUAAUAAAAUGGAUUGGAACCAAAUUUAGUAUUGUACUUUUGGAAGUUCAUG
.((((((..........))))))....((((((((((((((((((...((.((..(((....)))..)).))...)))...)))))))))))))))............ ( -22.60)
>DroSec_CAF1 6298 108 + 1
UGUUUUCUUACGUACCUAGAUGCUGUUAAAGUGCAAUAUUAGUGGUAAUAUUUUGUUUAAUAAAAUGGAUUGGAACCAAAUUUAGUAUUGUACUUUUGGAAGUUCAUG
..................((.(((...(((((((((((((((((((..((.((..(((....)))..)).))..))))...)))))))))))))))....)))))... ( -24.50)
>DroSim_CAF1 6372 108 + 1
UGUUUUCUUACGUACCUAGAAGCUGUUAAAGUGCAAUAUUAGUGGUAAUAUUUUGUUUAAUAAAAUGGAUUGGAACCAAAUUUAGUAUUGUACUUUUGGAAGUUCAUG
..................(((.((...(((((((((((((((((((..((.((..(((....)))..)).))..))))...)))))))))))))))....)))))... ( -24.50)
>DroEre_CAF1 6192 108 + 1
UGUUUUCUUACGUACCGAAAAGCUGUUAAAGUGCAAUAUUAGUACUAAUAUUUUGUUCAAUAAAAUGGAUUGGAACUAUACUUAGUAUUGUGCUUUUGGAAGUGAAUG
.......((((...((.(((((((((......)))....((((((((((((....((((((.......))))))...))).))))))))).))))))))..))))... ( -20.60)
>DroYak_CAF1 6393 108 + 1
UGUGGUUUUACGCACCAAGAAACUGUUUAAGUGCAAUAUUAGUGAUAGUAUUUUAUUCAAUAAAAUGGAUUGGAACUAUAUUUAGUAUUGUACUUUUGGAAGUGAAUG
((((......)))).......(((....((((((((((((((..(((((.((..(((((......)))))..)))))))..)))))))))))))).....)))..... ( -26.00)
>consensus
UGUUUUCUUACGUACCUAGAAGCUGUUAAAGUGCAAUAUUAGUGGUAAUAUUUUGUUUAAUAAAAUGGAUUGGAACCAAAUUUAGUAUUGUACUUUUGGAAGUUCAUG
.....................(((...(((((((((((((((((((..((.((((((......)))))).))..))))...)))))))))))))))....)))..... (-17.96 = -17.88 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:01 2006