Locus 5960

Sequence ID 3R_DroMel_CAF1
Location 15,736,175 – 15,736,269
Length 94
Max. P 0.638937
window9723

overview

Window 3

Location 15,736,175 – 15,736,269
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 77.14
Mean single sequence MFE -17.59
Consensus MFE -8.75
Energy contribution -9.87
Covariance contribution 1.11
Combinations/Pair 1.06
Mean z-score -2.61
Structure conservation index 0.50
SVM decision value 0.22
SVM RNA-class probability 0.638937
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15736175 94 - 27905053
UACAAAGGCUGAUAAGAAACGCAAUUGAGCUUCGUAAAAUACUUUCAUCAAGAGUGAAAGAGAAAGGGCCUUAUCAAUAACAACAACAAAAAAC
....((((((.....(((..((......)))))........(((((((.....)))))))......))))))...................... ( -15.70)
>DroEre_CAF1 4687 79 - 1
UACAAAGGCUGAUAA-------------GCUCCGUAACAUACCUUCACCAAAAGUGAAAGAGAAACGGCCUUAUCAGUAACAAAAA--CUAAAC
.......((((((((-------------(..((((........(((((.....)))))......)))).)))))))))........--...... ( -18.54)
>DroYak_CAF1 4843 92 - 1
CACAUAGGCUGAUAAGAAGGGCAAUUGAGCUCCGUACAAUACUUUCAUCAAGAGUGAAAGAGAAAGGGGCUUAUCAAUGAGAAAAA--CUAAAC
....((((((.........)))...((((((((........(((((((.....))))))).....)))))))).............--)))... ( -18.52)
>consensus
UACAAAGGCUGAUAAGAA__GCAAUUGAGCUCCGUAAAAUACUUUCAUCAAGAGUGAAAGAGAAAGGGCCUUAUCAAUAACAAAAA__CUAAAC
.........(((((((....((......))...........(((((((.....))))))).........))))))).................. ( -8.75 =  -9.87 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:00 2006