| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,209,893 – 2,209,984 |
| Length | 91 |
| Max. P | 0.739628 |
| Location | 2,209,893 – 2,209,984 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 82.32 |
| Mean single sequence MFE | -26.15 |
| Consensus MFE | -19.46 |
| Energy contribution | -19.52 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2209893 91 - 27905053 UCGGAGCAAA-GGCUCCAAUGAGAACGUGACUUUGUUUUUAUUGGAUGGUUAAACAAUAAAUGGGAGGCCGACAU----------UCGUUGUUCCAAUGAGA ..(((((((.-((.(((((((((((((......)))))))))))))(((((...((.....))...)))))....----------)).)))))))....... ( -27.70) >DroSec_CAF1 9077 91 - 1 ACGGAGCAAA-GGCUCCAAUGAGAACGUGACUUUGUUUUUAAUGGAUGGGUAAACAAUAAAUGGGAGGCCGACAU----------UCGUUGCUCCAAUGCGA ..(((((((.-(((((((.((((((((......)))))))).))))((......))...........)))(....----------.).)))))))....... ( -26.20) >DroSim_CAF1 9145 91 - 1 ACGGAGCAAA-GGCUCCAAUGAGAACGUGACUUUGUUUUUAUUGGAUGGGUAAACAAUAAAUGGGAGGCCGACAU----------UCGUUGUUCCAAUGCGA ..(((((((.-((((((((((((((((......)))))))))))))((......))...........)))(....----------.).)))))))....... ( -27.50) >DroEre_CAF1 9134 90 - 1 AGGGAGCAGU--GCUUUAGUGAGAACGUGACUUUGUUUUUAUUGGAUGGGUAAACAAUAAAUGGGAGGCCGACAU----------UCGGUGUUCCAAUGCGA .....(((.(--(((((((((((((((......)))))))))))...))))).........(((((.((((....----------.)))).))))).))).. ( -27.10) >DroYak_CAF1 8440 92 - 1 ACGAAGCAGGCGACUUCAGUGAGAACGUGACUUUGUUUUUAUUGAAUGGUUAAACAAUAAAUGGGAGGCCGCCAU----------UCGUUGUUCCAAUUAAA (((((...(((...(((((((((((((......))))))))))))).((((...((.....))...))))))).)----------))))............. ( -24.50) >DroAna_CAF1 6767 101 - 1 GCGAAUCAGC-GACUUUAAUGAGAACGUGACUUUGUUUUUAUUGGAUGUGUAAACAAUUAAUGGGAGGCAUAGAGAGGGCCAGGCAGGCCAUUCCACUGCGA (((.....((-(..(((((((((((((......)))))))))))))..)))..........(((((...........((((.....)))).))))).))).. ( -23.90) >consensus ACGGAGCAAA_GGCUCCAAUGAGAACGUGACUUUGUUUUUAUUGGAUGGGUAAACAAUAAAUGGGAGGCCGACAU__________UCGUUGUUCCAAUGCGA ..(((((((.....(((((((((((((......)))))))))))))..(((...((.....))....)))..................)))))))....... (-19.46 = -19.52 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:00 2006