| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,724,045 – 15,724,158 |
| Length | 113 |
| Max. P | 0.635658 |
| Location | 15,724,045 – 15,724,158 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 77.38 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -21.74 |
| Energy contribution | -21.05 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15724045 113 - 27905053 -AUU---AAUUAUUCUAAGUACCACUUACAUAUUCGUCACGCUGUGAGGCAAACGGAUCUCGUUGUUCGUGAUCUAGAUACUUCUCCAGAUUGAAGAAGGUAUCGAAGAAGACGUGC -...---........((((.....))))......((((..(((....)))....(((((.((.....)).))))).(((((((((.(.....).)))).)))))......))))... ( -22.80) >DroGri_CAF1 21000 98 - 1 ----------------G---AUUACUUACAGACUCAUCCCGCUGUGCGGCAAAUGGAUCGCGCUGCUCGUGAUCCAGAUAUUUCUCCAGAUUGAAGAAGGUAUCGAAGAAGACGUGC ----------------.---...........((((.((((((...))))....(((((((((.....)))))))))(((((((((.(.....).)))).)))))...)).)).)).. ( -23.40) >DroEre_CAF1 20391 116 - 1 -UCUACCACUUAUUGUGGGCACCACUUACAUAUUCGUCUCGCUGAGAGGCAAACGGAUCUCGCUGUUCGUGAUCCAGAUACUUCUCCAGAUUGAAGAAAGUGUCGAAGAAGACGUGC -....((((.....))))((((..(((.....((((((((.....)))))....(((((.((.....)).))))).(((((((((.(.....).)).)))))))))).)))..)))) ( -35.00) >DroYak_CAF1 21633 117 - 1 CUUCACCAAUUGUUGCUAGAACCACUUACAUAUUCAUCUCGCUGAGAGGCAAACGGAUCUCGUUGUUCGUGAUCCAGAUACUUCUCCAGAUUGAAGAAAGUGUCGAAGAAGACGUGC ((((.......(((.....)))(((((........((((.(((....)))....(((((.((.....)).))))))))).((((........)))).)))))..))))......... ( -26.80) >DroMoj_CAF1 18862 113 - 1 -AUCAUCAAUCAGUUUG---AAAACUUACGGAUUCAUCGCGCUGUGCAGCGAAUGGAUCACGUUGCUCGUGAUCCAGAUACUUCUCCAAAUUGAAGAACGUAUCGAAGAACACGUGC -....((((.....)))---).....((((..(((.((.((((....))))..(((((((((.....)))))))))(((((((((.(.....).)))).))))))).)))..)))). ( -36.00) >DroAna_CAF1 20640 111 - 1 -AGU---UAUCGUUAAAAGAA--ACUCACAUAUUCGUCCCGCUGCGAGGCAAAUGGAUCGCGUUGUUCGUGAUCCAGAUAUUUUUCCAGAUUAAAGAAAGUGUCGAAGAAUACGUGG -(((---(.((.......)))--)))(((.(((((.((..(((....)))...(((((((((.....)))))))))(((((((((..........))))))))))).))))).))). ( -30.60) >consensus _AUU___AAUUAUUGUGAG_ACCACUUACAUAUUCAUCCCGCUGUGAGGCAAACGGAUCUCGUUGUUCGUGAUCCAGAUACUUCUCCAGAUUGAAGAAAGUAUCGAAGAAGACGUGC ..........................(((...(((.((..(((....)))....(((((.((.....)).))))).(((((((((.(.....).)))).))))))).)))...))). (-21.74 = -21.05 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:55 2006