Locus 5957

Sequence ID 3R_DroMel_CAF1
Location 15,716,982 – 15,717,078
Length 96
Max. P 0.910216
window9718

overview

Window 8

Location 15,716,982 – 15,717,078
Length 96
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 72.12
Mean single sequence MFE -31.83
Consensus MFE -8.66
Energy contribution -8.91
Covariance contribution 0.25
Combinations/Pair 1.17
Mean z-score -2.54
Structure conservation index 0.27
SVM decision value 1.07
SVM RNA-class probability 0.910216
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15716982 96 - 27905053
ACGCACA--CUGGCCCAAUGCACUUUACAUAC-ACUUUACGAGCCAGAG--UGCACUUGUGUGUGUAUGUGUGUGGCUGGUGGG-GUGUAUGGUGGUGCA-UG
..((...--...))...(((((((...(((((-(((((((.(((((.((--(((((......))))))...).))))).)))))-)))))))..))))))-). ( -44.00)
>DroPse_CAF1 16721 91 - 1
UCUCAUUCCGCCUUCUAAUGCACUUUACAUAUGACUGUCUGUUCCCCAC--U-CGC-UA------AGUGUGUGUGCUCGGUGUGUGUGUCUG--UGUGCAUUA
...............((((((((..(((((((.((((...((....(((--.-(((-..------.))).))).)).)))))))))))....--.)))))))) ( -22.40)
>DroSec_CAF1 13207 87 - 1
ACGCACA--CUGGCCGAAUGCACUUUGCAUAC-ACUUUACGAGCCAGAG--UGCGCGCG------UGUGUGUGUGGUUGGUGGG-GUGUAUG---GUGCA-UG
..((((.--...((.....))......(((((-(((((((.(((((..(--..(((...------.)))..).))))).)))))-)))))))---)))).-.. ( -36.00)
>DroEre_CAF1 13420 87 - 1
ACGCACA--CUCGCCCAAUGCACUUUACAUAC-ACUUUACGAGCCAGUG--UGCGUGUG------UGUGUGUGUGGUUGGCGGG-GUGUAUA---GUGCA-UG
..((((.--..(((((...((...((((((((-((..((((.((....)--).))))..------.))))))))))...)).))-)))....---)))).-.. ( -34.40)
>DroYak_CAF1 14904 89 - 1
ACGCACA--CUCGCCCAAUGCACUUUACAUAC-ACUUUACGACCCAGUGUGUGCGUAUG------UGUGUGUGUGGUUGGUGGG-GUGUAUA---GUGCA-UG
..((((.--..(((((.....(((.(((((((-((..((((((.......)).)))).)------)))))))).))).....))-)))....---)))).-.. ( -32.50)
>DroPer_CAF1 16682 89 - 1
UCUCAUUCCGCCUUCUAAUGCACUUUACAUAUGACUGUCUGUUCCCCAC--U-CGC-UA------AGUGUGUGUGCUCGGUGU--GUGUCUG--UGUGCAUUA
...............((((((((...((((((.((((...((....(((--.-(((-..------.))).))).)).))))))--))))...--.)))))))) ( -21.70)
>consensus
ACGCACA__CUCGCCCAAUGCACUUUACAUAC_ACUUUACGAGCCAGAG__UGCGC_UG______UGUGUGUGUGGUUGGUGGG_GUGUAUG___GUGCA_UG
..((((............(.((((.(((((((.((...............................)))))))))...)))).)...........)))).... ( -8.66 =  -8.91 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:53 2006