| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,713,610 – 15,713,703 |
| Length | 93 |
| Max. P | 0.638132 |
| Location | 15,713,610 – 15,713,703 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 76.28 |
| Mean single sequence MFE | -29.77 |
| Consensus MFE | -20.46 |
| Energy contribution | -22.18 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15713610 93 + 27905053 -----CCUUGUCCACCACCGAUCCAUUGGACAGGGGGGCAAAGUGUGGCCCCAGUUGCGCGGCUGCUACUGCAAAGCUGC--AACACCGAAGCAAA------UGUU -----.((((((((............))))))))(((((........))))).(((((((...(((....)))..)).))--)))...........------.... ( -33.20) >DroVir_CAF1 11092 92 + 1 UCUCACCUUGUCCACGACCGAUCCAUUGGACAGGGCGGCAAAGUGUGGACCCAGCUGUGUGGCAACUGCUGCGAAGCUGCGCAACA--------AA------UGUU ...(.(((((((((............))))))))).)(((...(((.(.(.(((((.((..((....))..)).))))).)).)))--------..------))). ( -31.10) >DroGri_CAF1 9106 96 + 1 UCUCACCUUGUCGACUACUGAUCCAUUGGACAGUGGGGCAAAGUGUGGCCCCAGUUGUGUUGCUACUGCUGCAAAGCUGCACAAAAAGGA----UA------UAUG .....((((..(((((((((.(((...)))))))(((((........))))))))))(((.((....(((....))).)))))..)))).----..------.... ( -29.30) >DroMoj_CAF1 7654 96 + 1 UCUCACCUUGUCUACUACCGAUCCAUUGGACAGUGGGGCAAAGUGUGGCCCCAGCUGUGUGGCUACUGCUGCAAAGCUACGCAACACAGA----AA------UGUU .......(((((((............)))))))((((((........)))))).((((((.((....(((....)))...)).)))))).----..------.... ( -29.40) >DroAna_CAF1 9299 99 + 1 -----CCUUGUCCACCACCGAUCCAUUGGACAGGGGGGCAAAGUGGGGCCCCAGUUGUGUGGCUGCUGCUGCGAAGCUGC--AACAUCGAAUCAAAACGGAAUAUU -----(((((((((............)))))))))((((........))))(((((.((..((....))..)).))))).--........................ ( -31.40) >DroPer_CAF1 13470 86 + 1 -----CCUUAUCCACCACCGAACCAUUCGAAAGGGCUGCGAAAUGCGGCCCCAAUUGUGUGGCUACUGCUGCAAAGCUGC--AACA-------AAA------UAGG -----.(((((((((((.(((.....)))...(((((((.....)))))))....)).))))....((.((((....)))--).))-------..)------)))) ( -24.20) >consensus _____CCUUGUCCACCACCGAUCCAUUGGACAGGGGGGCAAAGUGUGGCCCCAGUUGUGUGGCUACUGCUGCAAAGCUGC__AACA__GA____AA______UAUU .....(((((((((............)))))))))((((........))))(((((.((((((....)))))).)))))........................... (-20.46 = -22.18 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:50 2006