Locus 5951

Sequence ID 3R_DroMel_CAF1
Location 15,699,144 – 15,699,236
Length 92
Max. P 0.938957
window9708

overview

Window 8

Location 15,699,144 – 15,699,236
Length 92
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 94.40
Mean single sequence MFE -28.42
Consensus MFE -24.82
Energy contribution -25.02
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.87
SVM decision value 1.30
SVM RNA-class probability 0.938957
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15699144 92 - 27905053
--GUUGUAAAGCCUUUCGGUUAUUCCGCCGGUUCGAAGGAUCAGCGAGCAUUGAAGGGCUCUUCUCUAAAGGGGAAGUUUAGAUUAGAUAUCUG
--.......(((((((((((.....(((.((((.....)))).)))...)))))))))))((((((.....))))))..(((((.....))))) ( -27.10)
>DroSec_CAF1 8609 92 - 1
--GUUGUAAAGCCUUUCGGUUAUUCCGCCGGUUCGAAGGAUCAGCGAGCAUUGAAGGGCUCUUCUCUAAAGGGGAAGUUUAGAUUAGAUAUCUG
--.......(((((((((((.....(((.((((.....)))).)))...)))))))))))((((((.....))))))..(((((.....))))) ( -27.10)
>DroSim_CAF1 8655 92 - 1
--GUUGUAAAGCCUUUCGGUUAUUCCGCCGGUUCGAAGGAUCAGCGAGCAUUGAAGGGCUCUUCUCUAAAGGGGAAGUUUAGAUUAGAUAUCUG
--.......(((((((((((.....(((.((((.....)))).)))...)))))))))))((((((.....))))))..(((((.....))))) ( -27.10)
>DroEre_CAF1 8847 92 - 1
--GUUGUAAAGCCUUUCGGUUAUUCCGCGGCUUCGAAGGAUCAGCGCUCAUUGAAGGGCUCUUCUCUAAAGGGGAAGUUGCGAUUAGAUAGAAG
--((((((((((((((((((.....(((....((....))...)))...)))))))))))((((((.....))))))))))))).......... ( -29.00)
>DroYak_CAF1 8823 94 - 1
UGGUUGUAAAGCCUUUCGGUUAUUCCGCGGGUUCGAAGGAUCAGCGAGCAUUGAAGGGCUCUUCUCUAAAGGGGAAGUUGCGAUUAGAUAUCAG
((((((((((((((((((((.....(((.((((.....)))).)))...)))))))))))((((((.....)))))))))))))))........ ( -31.80)
>consensus
__GUUGUAAAGCCUUUCGGUUAUUCCGCCGGUUCGAAGGAUCAGCGAGCAUUGAAGGGCUCUUCUCUAAAGGGGAAGUUUAGAUUAGAUAUCUG
.........(((((((((((.....(((.((((.....)))).)))...)))))))))))((((((.....))))))................. (-24.82 = -25.02 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:43 2006