Locus 5950

Sequence ID 3R_DroMel_CAF1
Location 15,698,637 – 15,698,745
Length 108
Max. P 0.693125
window9707

overview

Window 7

Location 15,698,637 – 15,698,745
Length 108
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 79.96
Mean single sequence MFE -26.52
Consensus MFE -15.32
Energy contribution -15.08
Covariance contribution -0.24
Combinations/Pair 1.18
Mean z-score -1.92
Structure conservation index 0.58
SVM decision value 0.33
SVM RNA-class probability 0.693125
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15698637 108 + 27905053
UUAGAUAUGGUUCUCAAUCAUCUGCGCAUAUUUGGCCAGAUAUGAGCCAUUAUGGUUGGCAUUGCAUAAGCC--ACCCCUUUGGCACGAUCCACACUCAACACUG---UAUUA
...((((((((..(((...(((((.((.......))))))).)))((((....((.((((.........)))--).))...))))................))))---)))). ( -25.90)
>DroSec_CAF1 8110 109 + 1
UUAGAUAUGGUUCUC-AUCAUCUGCGCAUAUUUGGCCAGAUAUGAGCCAUUAUGGUUGGCAUUGCAUAAGCCCUUCCCCCUAGGCACGAUCCCCACUCAAUACUG---UAUCU
..(((((((((..((-((.(((((.((.......)))))))))))(((.....((..(((.........)))...)).....)))................))))---))))) ( -26.40)
>DroSim_CAF1 8156 109 + 1
UUAGAUAUGGUUCUC-AUCAUCUGCACCUAUUUGGCCAGAUAUGAGCCAUUAUGGUUGGCAUUGCAUAAGCCCCUCCCCUUUGGCACGAUCCGCACUCAAUACUG---UAUCU
..(((((((((..((-((.(((((..((.....)).)))))))))((((....((..(((.........)))...))....))))................))))---))))) ( -27.80)
>DroEre_CAF1 8359 100 + 1
GUUGAUGUGGCUCUC----AUCUGCGCAUAGUUGGCCAGCUAUGAGC-AUUAUAGUUGGCAUUGCAUAAGCCC------CUCGGCACGAUCC--ACUCAAUACUAUUGUAUCU
(((((.((((.((..----......(((......(((((((((((..-.)))))))))))..)))....(((.------...)))..)).))--)))))))............ ( -31.80)
>DroYak_CAF1 8351 89 + 1
UUUCAUGU-------------UUGCGCAUAUUUGGCCAGAUAUGAGCCAUUAAAGUUGGCAUUGCAUAAGCCC------AUCGGCACGAUCC--ACUCAAUACUA---UAUCU
..((((((-------------(((.((.......)))))))))))((((.......)))).........(((.------...))).......--...........---..... ( -20.70)
>consensus
UUAGAUAUGGUUCUC_AUCAUCUGCGCAUAUUUGGCCAGAUAUGAGCCAUUAUGGUUGGCAUUGCAUAAGCCC__CCCCCUCGGCACGAUCC_CACUCAAUACUG___UAUCU
...((((...............(((((((((((....))))))).((((.......))))..))))...(((..........))).......................)))). (-15.32 = -15.08 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:42 2006