Locus 595

Sequence ID 3R_DroMel_CAF1
Location 2,205,746 – 2,205,866
Length 120
Max. P 0.524953
window947

overview

Window 7

Location 2,205,746 – 2,205,866
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.83
Mean single sequence MFE -39.42
Consensus MFE -20.32
Energy contribution -20.85
Covariance contribution 0.53
Combinations/Pair 1.48
Mean z-score -1.72
Structure conservation index 0.52
SVM decision value -0.02
SVM RNA-class probability 0.524953
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2205746 120 + 27905053
AGAUGCUGUCGCCACUCCGCCUGAGUGCGGAACGCCUUGCCGCAUUCCGGACAUAUGUAAACCAUGUGCGCCUCCAGACGCGCAUUAAGCCGACUUUGUUCAUCCGAGAGCGUCACGUUC
.((((((.(((...........((((((((.........)))))))).(((((...((.......((((((........)))))).......))..)))))...))).))))))...... ( -40.44)
>DroVir_CAF1 4683 120 + 1
AAGUGCUGUCGCCACUCGGCUUGUGUGCGAAACGCCUUGCCGCAUUCAGGGCAUAUAUAGACCAUAUGUGCUUCCAGGCGAGCAUUAAGUUUGCUUUGCUCAUCGGUCAGCACGCUGUUU
..((((((.((((...((((..((((.....))))...))))......((((((((((.....))))))))))...)))(((((..(((....))))))))....).))))))....... ( -43.90)
>DroWil_CAF1 1523 120 + 1
AAAUGCGUACGCCAUUCGACUUGGGUACGAAACGCUUUUCCACAUUCUGGACAUAUGUAGACCAUGUGAGCCUCCAAGCGGGCAUUAAGACGACUUUGCUCAUCGGUGAGCACUAGGCUU
.(((((((((.(((.......)))))))....(((((.((((.....))))((((((.....)))))).......))))).))))).......((.((((((....))))))..)).... ( -34.30)
>DroMoj_CAF1 4352 120 + 1
AAAUGCUGUCGCCAUUCAGCUUGUGUUCGGAACGCCUUCCCACAUUCUGGGCAUAUAUAGACCAUGUGGGCUUCCAGGCGAGCAUUUAGUUUGCUUUGCUCAUCAGUCAGUACGCUGUUU
...(((((.((((....(((....))).((((.(((..((((.....))))(((((.......)))))))))))).)))(((((...((....)).)))))....).)))))........ ( -34.90)
>DroAna_CAF1 3031 120 + 1
AGAUGCUGACGCCAUUCGACCUGUGUGCGAAACGCCUUACCGCACUCCGGGCAAAUGUAUACCAUAUGUGCCUCCAGGCGGGCGUUUAAUCGGCUCUGCUCAUCCGAUAAUGUCACAUUU
(((((.(((((((((.......))).)).(((((((....(((.((..(((((.((((.....)))).)))))..)))))))))))).(((((..........)))))...))))))))) ( -35.50)
>DroPer_CAF1 7956 120 + 1
AGAUGCUGACGCCACUCGGCCUGUGUCCGGAAGGCCUUUCCACACUCAGGGCAUAUGUACACCAUGUGCGCCUCCAGGCGAGCAUUCAAUCUGCUUUGUUCGUCCGUCAGCAUCAUAUUU
.((((((((((((....)))........(((.(((....((.......))(((((((.....))))))))))))).((((((((............)))))))).)))))))))...... ( -47.50)
>consensus
AAAUGCUGACGCCACUCGGCCUGUGUGCGAAACGCCUUGCCACAUUCAGGGCAUAUGUAGACCAUGUGCGCCUCCAGGCGAGCAUUAAGUCGGCUUUGCUCAUCCGUCAGCACCAUGUUU
.(((((((.(........(((((.((((.....((((...........))))(((((.....)))))))))...)))))(((((............)))))....).)))))))...... (-20.32 = -20.85 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:59 2006