Locus 5949

Sequence ID 3R_DroMel_CAF1
Location 15,696,662 – 15,696,754
Length 92
Max. P 0.517708
window9706

overview

Window 6

Location 15,696,662 – 15,696,754
Length 92
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.10
Mean single sequence MFE -24.27
Consensus MFE -17.24
Energy contribution -17.02
Covariance contribution -0.22
Combinations/Pair 1.38
Mean z-score -1.04
Structure conservation index 0.71
SVM decision value -0.03
SVM RNA-class probability 0.517708
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15696662 92 - 27905053
GUCCA----CC---UAGUAACACCCA----------CUUCUCUCACAGAUUGGUAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUUAUACCCCUGCAAGCCU
.....----..---(((((((..(((----------..(((.....))).))).(((.(((((..(....)...))))).))))))))))................... ( -23.70)
>DroPse_CAF1 13439 104 - 1
---GAACACUCUCAUUGUAA--UCCCUUUCGAUUGGUUUAUCUCUUAGAUUGGUGUGUCCGCUUUCUUUGGCGUGGCUGUGAUGCUUAUGUUUAUCCCCCUGCAAGCGU
---(((((....(((..((.--.........((..(((((.....)))))..))..(((((((......)))).)))))..)))....)))))................ ( -19.20)
>DroSec_CAF1 6065 92 - 1
GUCAG----CC---UAGUAACAUCCA----------CUUAUCCCACAGAUUGGUAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUUAUACCCCUGCAAGCAU
.....----..---((((((((((.(----------((....((((.....((.....))(((......))))))).)))))))))))))................... ( -24.70)
>DroSim_CAF1 6293 92 - 1
GUCAG----CC---UAGUAACAUCCA----------CUUAUCCCACAGAUUGGUAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUUAUACCCCUGCAAGCCU
.....----..---((((((((((.(----------((....((((.....((.....))(((......))))))).)))))))))))))................... ( -24.70)
>DroEre_CAF1 6295 94 - 1
GUCAUGCAC-----UAGUAACACCCA----------CUUCCUUCACAGAUUGGCAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUCAUACCCCUGCAGGCUU
(((.((((.-----.(((.......)----------))......((((...((((((.(((((..(....)...))))).)))))).)))).........))))))).. ( -28.00)
>DroYak_CAF1 6293 96 - 1
GUCAUACACCC---UUGUAACAUCCA----------CUUCCUUCGCAGAUUGGCAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUUAUACCCCUGCAAGCUU
...........---..((((((((.(----------((.((..(((.((..(((......)))....)).))).)).)))))))))))..................... ( -25.30)
>consensus
GUCAA____CC___UAGUAACAUCCA__________CUUAUCUCACAGAUUGGUAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUUAUACCCCUGCAAGCCU
............................................((((...((((((.(((((..(....)...))))).)))))).)))).................. (-17.24 = -17.02 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:41 2006