Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,688,155 – 15,688,255 |
Length | 100 |
Max. P | 0.531495 |
Location | 15,688,155 – 15,688,255 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -15.03 |
Consensus MFE | -12.33 |
Energy contribution | -12.56 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.11 |
Mean z-score | -1.31 |
Structure conservation index | 0.82 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15688155 100 - 27905053 ACAUCAAAAAGA-------AAAUCAACAAAAAUGUUGAGAUGAAAUUAAUCCUAGGUUACUUCCCUUUAGUUAUUCUAUCCAAUAUAAGCUACAGUCAAUUAACAAA .((((.......-------...((((((....)))))))))).............((((.((..((.(((((...............))))).))..)).))))... ( -11.06) >DroSec_CAF1 215910 107 - 1 UAGUCAACAGUCAUUUUUUAUUUAAACAAAUAUUUUGGGAUGAAAUGAAUCCCAGGUUACUUCCCUUUAGUUAUCCUAUUCAAUAUAAACUAGAGUCCAUUAACAAU ..................................(((((((.......)))))))((((.....((((((((...............)))))))).....))))... ( -15.76) >DroSim_CAF1 211860 107 - 1 UAGUCAACAGUCAUUUUUUAUUUAAACAAAUAUUUUGGGAUGAAAUGAAUCCCAGGUUAAUUCCCUUUAGUUAUCCUAUCCAAUAUAAACUAGAGUCCAUUAACAAU ..................................(((((((.......)))))))((((((...((((((((...............))))))))...))))))... ( -18.26) >consensus UAGUCAACAGUCAUUUUUUAUUUAAACAAAUAUUUUGGGAUGAAAUGAAUCCCAGGUUACUUCCCUUUAGUUAUCCUAUCCAAUAUAAACUAGAGUCCAUUAACAAU ..................................(((((((.......)))))))((((.....((((((((...............)))))))).....))))... (-12.33 = -12.56 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:39 2006