Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,686,974 – 15,687,070 |
Length | 96 |
Max. P | 0.500000 |
Location | 15,686,974 – 15,687,070 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -26.92 |
Consensus MFE | -16.79 |
Energy contribution | -17.52 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.27 |
Mean z-score | -1.39 |
Structure conservation index | 0.62 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15686974 96 + 27905053 UUUCCAAUUA-------CGUUCGCCAUUGUUGAGUUGAGAGUUCGUCGAGUGAGCGGAG-UAGAGUGACAGUGGGCAGAUAAUUGGGAAAAGACCGUACUGGUU ((((((((((-------(...(.(((((((((..(((...(((((.....)))))....-)))..))))))))))..).))))))))))..((((.....)))) ( -26.90) >DroSec_CAF1 214739 96 + 1 UUUACAAUUA-------CGUUCGCCAUUGUUGGGUUGAGAGUUCGUCGAGUGAGCGGAG-UAGAGUGACAGUGGGCGGAUAAUUGGGAAAAGACCGUGCAGGUU ((..(((((.-------.((((((((((((((..(((...(((((.....)))))....-)))..))))))).))))))))))))..))..((((.....)))) ( -26.70) >DroSim_CAF1 210689 96 + 1 UUUACAAUUA-------CGUUCGCCAUUGUUGAGUUGAGAGUUCGUCGAGUGAGCGGAG-UAGAGUGACAGUGGGCGGAUAAUUGGGAAAAGACCGUGCAGGUU ((..(((((.-------.((((((((((((((..(((...(((((.....)))))....-)))..))))))).))))))))))))..))..((((.....)))) ( -27.20) >DroEre_CAF1 192289 96 + 1 UUUCCAAUUA-------CGUUCGCCAUUGUUCAGUUGAGAGUUCAUCGAAUGAGCGGAG-UAGAGUGACAGUGGGCGGAUGUUUGGGAAAAGGCCAUGCAAGCU (((((((..(-------(((((((((((((.((.((....((((((...))))))....-..)).))))))).))))))))))))))))..(((.......))) ( -31.30) >DroYak_CAF1 214059 96 + 1 UUUCCAAUUA-------CGUUCGCCAUUGUUGAGUUGAGAGUUCAUCGAGUGAGCGGAG-UAGAGUGACAGUGGGCGGAUAUUUGGAAAAAGACCGUGCAGGUU (((((((...-------.((((((((((((((..(((...((((((...))))))....-)))..))))))).)))))))..)))))))..((((.....)))) ( -32.10) >DroAna_CAF1 208763 89 + 1 --UUCAAUUAAUUCUGCCAUUUGCCAUUGUUGAGUGUUGAGUUUUGCUUGUGAAAUGAGCUCGAGUGACGAUGG-------------AGAAGACCUAACGCGUU --.................((..(((((((((....((((((((..(....)....)))))))).)))))))))-------------..))((((....).))) ( -17.30) >consensus UUUCCAAUUA_______CGUUCGCCAUUGUUGAGUUGAGAGUUCGUCGAGUGAGCGGAG_UAGAGUGACAGUGGGCGGAUAAUUGGGAAAAGACCGUGCAGGUU ..................((((((((((((((..(((...(((((.....))))).....)))..))))))))).)))))...........((((.....)))) (-16.79 = -17.52 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:38 2006