| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,665,503 – 15,665,600 |
| Length | 97 |
| Max. P | 0.545780 |
| Location | 15,665,503 – 15,665,600 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 88.80 |
| Mean single sequence MFE | -28.55 |
| Consensus MFE | -22.67 |
| Energy contribution | -22.90 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15665503 97 - 27905053 AUUGAAUUGACUU---UCUGUCAGUCUGUGUGUCGGCUGCUGGCAG-------------UA--UGUUCGUCGCCAUUUGCUGACAGGCGCUAUUACAAUUUUAUUAACAUAAAUU ((((.((((((..---...))))))..((.(((((((...((((..-------------(.--.....)..))))...))))))).)).......))))................ ( -25.60) >DroSec_CAF1 193428 99 - 1 AUUGAAUUGACUA---UCUGUCAGUCUGUGUGUCGGCUGCUGGCAG-------------UGUUUGUUCGUCGCCAUUUGCUGACAGGCGCUAUUACAAUUUUAUUAACAUAAAUU ((((.((((((..---...))))))..((.(((((((...((((..-------------((......))..))))...))))))).)).......))))................ ( -28.20) >DroSim_CAF1 189480 99 - 1 AUUGAAUUGACUU---UCUGUCAGUCUGUGUGUCGGCUGCUGGCAG-------------UGUUUGUUCGUCGCCAUUUGCUGACAGGCGCUAUUACAAUUUUAUUAACAUAAAUU ((((.((((((..---...))))))..((.(((((((...((((..-------------((......))..))))...))))))).)).......))))................ ( -28.20) >DroEre_CAF1 170949 97 - 1 AUUGAAUUGACUU---UCUGUCAGUCUGUGUGUCGGCUGCUGGCAG-------------UG--UGUUCGUCGCCAUUUGCUGACAGGCGCUAUUACAAUUUUAUUAACAUAAAUU ((((.((((((..---...))))))..((.(((((((...((((..-------------((--....))..))))...))))))).)).......))))................ ( -28.00) >DroYak_CAF1 191503 95 - 1 AUUGAAUUGACUU---UCUGUCAGUCUGUGUGUCGGCUGCUGGCAG-------------UG--UGUUCGUCGCCAUUUGCUGACAGGCGCUAUUACAAU--UAUUAACAUAAAUU ((((.((((((..---...))))))..((.(((((((...((((..-------------((--....))..))))...))))))).)).......))))--.............. ( -28.00) >DroAna_CAF1 188389 113 - 1 AUCGAAUUGACUUCUGUCAGUCAGACUGUAAGUUAGCUGCUGGCGGGCUGGUUGGCUGGCA--UGUUCGUCGCCAUUUGCUGACAGGCGGUAUUACUAUUUUAUUAACAUAAAUU ...((.(((((....)))))))..(((((..((((((...((((((((..(....)..)).--......))))))...))))))..)))))........................ ( -33.31) >consensus AUUGAAUUGACUU___UCUGUCAGUCUGUGUGUCGGCUGCUGGCAG_____________UG__UGUUCGUCGCCAUUUGCUGACAGGCGCUAUUACAAUUUUAUUAACAUAAAUU ((((.((((((........))))))..((.(((((((...((((...........................))))...))))))).)).......))))................ (-22.67 = -22.90 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:34 2006