Locus 5942

Sequence ID 3R_DroMel_CAF1
Location 15,664,067 – 15,664,178
Length 111
Max. P 0.730058
window9698

overview

Window 8

Location 15,664,067 – 15,664,178
Length 111
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 82.28
Mean single sequence MFE -28.90
Consensus MFE -21.20
Energy contribution -21.31
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.85
Structure conservation index 0.73
SVM decision value 0.42
SVM RNA-class probability 0.730058
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15664067 111 + 27905053
CAGCGUCAUUCAGUGGGUGGGUGUUGCCGGUGGAAAGUGCGGGCUUGCUACUGAUUGGCAAAGUUUUACAUUGUCGCUAAGACUAUAUAACUGCUAUAAAGUAGCAGUUUU
....((((.((((((.(..(((.(((((........).)))))))..))))))).))))..((((((((......).)))))))....(((((((((...))))))))).. ( -34.10)
>DroSec_CAF1 192000 94 + 1
CUGCGUCAUUCAGUGGGUG----U-------------UGCAGUCUGGCUACUGAUUGGCCAAGUCUUACAUAGUUGCUAAGACUAUCUAACUACAAUAAAGUAGCAGUUUU
((((((((.(((((((.((----.-------------.......)).))))))).))))..(((((((((....)).)))))))...................)))).... ( -26.30)
>DroSim_CAF1 187726 94 + 1
CUGCGUCAUUCAGUGGGUG----U-------------UGCAGUCUGGCUACUGAUUGGCCAAGUCUUACAUAGUUGCUAAGACUAUCUAACUACAAUAAAGUAGCAGUUUU
((((((((.(((((((.((----.-------------.......)).))))))).))))..(((((((((....)).)))))))...................)))).... ( -26.30)
>consensus
CUGCGUCAUUCAGUGGGUG____U_____________UGCAGUCUGGCUACUGAUUGGCCAAGUCUUACAUAGUUGCUAAGACUAUCUAACUACAAUAAAGUAGCAGUUUU
((((((((.(((((((...............................))))))).))))..((((((((......).)))))))...................)))).... (-21.20 = -21.31 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:33 2006