| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,659,185 – 15,659,284 |
| Length | 99 |
| Max. P | 0.609939 |
| Location | 15,659,185 – 15,659,284 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 82.78 |
| Mean single sequence MFE | -25.42 |
| Consensus MFE | -17.56 |
| Energy contribution | -17.32 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15659185 99 - 27905053 GGUUUUCCUUUUAAUUUUCGCACGUAAAGUGCGUGACUUUUAAUUAGACUACAAUAAAUGUGCGAAAUUGUGUGGGAGAUGAGUCUGCCAGUGGGCAGU---- .(((((((...((((((.((((((((((((.....)))))...(((........))))))))))))))))...)))))))....(((((....))))).---- ( -27.60) >DroVir_CAF1 325623 89 - 1 UUUGCUUCUUUCAA-UUUCGCGCGUAAAGUGCGUGACUUUUAAUUAGUCUACAAUAAGUGUGCGAAAUUGUGUGGGAGUCU-----CUAUA--------AUUC ...((((((..(((-(((((((((.....((...((((.......))))..)).....))))))))))))...))))))..-----.....--------.... ( -26.40) >DroSec_CAF1 187208 99 - 1 GGUUUUCCUUUUAAUUUUCGCACGUAAAGUGCGUGACUUUUAAUUAGACUACAAUAAAUGUGCGAAAUUGUGUGGGAGAUGAGUGUGUCAGUGGGCAGU---- .(((((((...((((((.((((((((((((.....)))))...(((........))))))))))))))))...))))))).....((((....))))..---- ( -22.60) >DroEre_CAF1 164741 99 - 1 GGUUUUCCUUUUAAUUUUCGCACGUAAAGUGCGUGACUUUUAAUUAGACUACAAUAAAUGUGCGAAAAUGUGUGGGAGAUGAGUGUGCCUGUGCACAAU---- .(((((((.....(((((((((((((((((.....)))))...(((........)))))))))))))))....)))))))...(((((....)))))..---- ( -28.00) >DroYak_CAF1 185129 99 - 1 GGUAUUCCUUUUAAUUUUCGCACGUAAAGUGCGUGACUUUUAAUUAGACUACAAUAACUGUGCGAAAAUGUGUGGGAGAUUAGUCUGCCUAUUGGCAAU---- ....(((((....((((((((((..(((((.....)))))...(((........)))..))))))))))....))))).......((((....))))..---- ( -25.10) >DroAna_CAF1 181822 98 - 1 GGUUUUCCUUUUAAUUUUCGCACGUAAAGUGCGUGACUUUUAAUUAGACUACAAUAAAUGUGCGAAAAUGUGUGGGUGAUGAGUCGACUAGUGUCUAA----- (..((.(((....(((((((((((((((((.....)))))...(((........)))))))))))))))....)))....))..)(((....)))...----- ( -22.80) >consensus GGUUUUCCUUUUAAUUUUCGCACGUAAAGUGCGUGACUUUUAAUUAGACUACAAUAAAUGUGCGAAAAUGUGUGGGAGAUGAGUCUGCCAGUGGGCAAU____ ...((((((......(((((((((((((((.....)))))...(((........)))))))))))))......))))))........................ (-17.56 = -17.32 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:32 2006