Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,202,761 – 2,202,865 |
Length | 104 |
Max. P | 0.988896 |
Location | 2,202,761 – 2,202,865 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 92.69 |
Mean single sequence MFE | -39.00 |
Consensus MFE | -34.32 |
Energy contribution | -33.64 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.14 |
Mean z-score | -1.88 |
Structure conservation index | 0.88 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2202761 104 + 27905053 GCGGGCUGAGAUGUUCCAUGGUCGCCGGAAGAUCGUGGUCAUAUCCAGCAAUCACGAGGUGGAUGAUGACCGCGUGCAACAGGAAGGCGCAGAAGGCGACGCAA ((((((......))))....((((((........(((((((((((((.(........).))))).))))))))((((.........))))....)))))))).. ( -42.00) >DroSec_CAF1 1996 104 + 1 GCGGGCUGAGAUGUUCCAUGGUCGCCGGAAGAUCGUGGUCAUAUCCAGCAACCAUGAGGUGGAUGAUGACCGCGUGCAGCAGGAAGGCGCAGAAGCCGACUCAA ....((((.(((.((((.........)))).)))(((((((((((((.(........).))))).))))))))...)))).((..(((......)))..))... ( -39.50) >DroSim_CAF1 1981 104 + 1 GCGGGCUGAGAUGUUCCAUGGUCGCCGGAAGAUCGUGGUCAUAUCCAGCAACCAUGAGGUGGAUGAUGACCGCGUGCAGCAGGAAGGCGCAGAAGCCGACUCAA ....((((.(((.((((.........)))).)))(((((((((((((.(........).))))).))))))))...)))).((..(((......)))..))... ( -39.50) >DroEre_CAF1 1826 104 + 1 GCGGGCUGAGAUGUUUCAUGGUCGCCGAAAGAUCGUGGUCAUAUCCAGCAAUCAUGAGGUGGAAGAUGACCGCGUGCAGCAGGAAGGUGGACAAGCCGAGUCAA ...((((..(((.((((.........)))).)))((((((((.((((.(........).))))..))))))))((.((.(.....).)).)).))))....... ( -33.90) >DroYak_CAF1 1234 104 + 1 GCGGGCUGAGAUGUUUCAUGGUCGCCGCAAGAUCGUGGUCAUAUCCAGCAAUCACGAGGUGGAAGAUGACCGCGUGCAGCAAGAAGGCGGUCAAGCCGAAGCAA ((.((((..((....)).((..((((((.....(((((((((.((((.(........).))))..)))))))))....)).....))))..))))))...)).. ( -40.10) >consensus GCGGGCUGAGAUGUUCCAUGGUCGCCGGAAGAUCGUGGUCAUAUCCAGCAAUCAUGAGGUGGAUGAUGACCGCGUGCAGCAGGAAGGCGCAGAAGCCGACUCAA ((((((((.(((((.((((((((.......))))))))..)))))))))..((((...)))).......))))............(((......)))....... (-34.32 = -33.64 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:58 2006