Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,645,603 – 15,645,700 |
Length | 97 |
Max. P | 0.989559 |
Location | 15,645,603 – 15,645,700 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 86.46 |
Mean single sequence MFE | -25.58 |
Consensus MFE | -20.92 |
Energy contribution | -21.92 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.53 |
Structure conservation index | 0.82 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15645603 97 + 27905053 AAAACUGAAAGAAAAAAAAAGGCAAACAGAAAACUGUUGAACAAGUUAACAAGUUGUUGGGCCCCCAGGCAGUGGAGCACUUUCAAUUGUCGGGGGC ....................(...(((((....)))))...)...(((((.....)))))((((((.((((((.(((....))).)))))))))))) ( -25.30) >DroSec_CAF1 173931 94 + 1 AAAACUGAAAGAAAAAGA--GAC-AACAGAAAACUGUUGAACAAGUUAACAAGUUGUUGGGCCCCCAGGCAGUGGAGCACUUUCAAUUGUCGGGGGC ..................--..(-(((((....))))))(((((.(.....).)))))..((((((.((((((.(((....))).)))))))))))) ( -28.10) >DroSim_CAF1 168592 95 + 1 AAAACUGAAAGAAAAAGA-AGGC-AACAGAAAACUGUUGAACAAGUUAACAAGUUGUUGGGCCCCCAGGCAGUGGAGCACUUUCAAUUGUCGGGGGC ..................-...(-(((((....))))))(((((.(.....).)))))..((((((.((((((.(((....))).)))))))))))) ( -27.80) >DroEre_CAF1 151777 83 + 1 AAAACAGAAAA----AGG--A----AC---AUACUGCUGCACAAGUUAACAAGUUGUUG-GCCCCCAGGCAGUGGAGCACUUUCAAUUGUCGGGGGC ...........----...--(----((---(.(((...((....)).....))))))).-((((((.((((((.(((....))).)))))))))))) ( -22.50) >DroYak_CAF1 175734 84 + 1 AAGACAGAAAAA---AGA--A----AC---AUACUGUUGAACAAGUUAACAAGUUGUUG-GCCCCCAGGCAGCGGAGCACUUUCAAUUGUCGGGGGC ............---...--(----((---(.((((((((.....))))).))))))).-((((((.(((((..(((....)))..))))))))))) ( -24.20) >consensus AAAACUGAAAGAAAAAGA__G_C_AACAGAAAACUGUUGAACAAGUUAACAAGUUGUUGGGCCCCCAGGCAGUGGAGCACUUUCAAUUGUCGGGGGC ...............................(((((((((.....))))).)))).....((((((.((((((.(((....))).)))))))))))) (-20.92 = -21.92 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:25 2006