Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,645,063 – 15,645,167 |
Length | 104 |
Max. P | 0.637363 |
Location | 15,645,063 – 15,645,167 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 86.80 |
Mean single sequence MFE | -30.72 |
Consensus MFE | -24.18 |
Energy contribution | -25.10 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.12 |
Mean z-score | -1.59 |
Structure conservation index | 0.79 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15645063 104 - 27905053 UACCGCCACCUCACUUCCACUUCCACUCCCACGCGAGCUCGAGACCUCCAGACCAAGAGAUCUCUCGGGGUGAGGUCCACAGACAGCGGUGAUCUAUGGGAAAU ((((((...((((((((........(((......)))...((((.(((........))).))))..))))))))(((....))).))))))............. ( -29.80) >DroSec_CAF1 173391 104 - 1 UACCGCCACCUCACUUCCACUCCCACUCCCACGCGAUCUCGAGACCUCCAGACCAAGAGAUCUCUCGGGGUGAGGUCCACAGACAGCGGUGAUCUAUGGGAAAU ....................(((((....(((((..(((...((((((...(((..(((....)))..)))))))))...)))..)).))).....)))))... ( -31.10) >DroSim_CAF1 168052 104 - 1 UACCGCCACCUCACUUCCACUCCCACUCCCACGCGAUCUCGAGACCUCAAGACCAAGAGAUCUCUCGGGGUGAGGUCCACAGACAGCGGUGAUCUAUGGGAAAU ....................(((((....(((((..(((...(((((((...((.(((....))).))..)))))))...)))..)).))).....)))))... ( -31.20) >DroEre_CAF1 151270 85 - 1 -----------------CACUCCCACUCCCACGCGAUCUCGAGGCCUCCAGAGCAAGACAUC--UCGGGGCGAGGUCCACGGACAGCCGUGAUCUAUGGGAAAU -----------------.........(((((...((((((...(((((.(((........))--).)))))))))))(((((....))))).....)))))... ( -31.20) >DroYak_CAF1 175194 102 - 1 UACCGCUACCUCACUCACACUCCAACUCCCACGCGAUCUCGAGACCUCCAGACCAAGAGAUC--UCGGGGCGAGGUCCACAGACAGCCGUGAUCCAUGGGAAAU ..........................(((((.(.((((((((((.(((........))).))--))))(((...(((....))).)))..))))).)))))... ( -30.30) >consensus UACCGCCACCUCACUUCCACUCCCACUCCCACGCGAUCUCGAGACCUCCAGACCAAGAGAUCUCUCGGGGUGAGGUCCACAGACAGCGGUGAUCUAUGGGAAAU ....................(((((....(((((..(((...((((((...(((..(((....)))..)))))))))...)))..)).))).....)))))... (-24.18 = -25.10 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:25 2006