| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,642,236 – 15,642,341 |
| Length | 105 |
| Max. P | 0.611049 |
| Location | 15,642,236 – 15,642,341 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 84.98 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -21.01 |
| Energy contribution | -21.23 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15642236 105 + 27905053 GCAACCCGAUGAGGGGUUACAAACAAAAAAAAAAAAAUGAAGUAGCUUGCCGGAGUAGGAGGAUCUGCCGGCGGAGAAGACAGCGAUGACAUGGACAUAAUUGCA (.(((((......))))).).....................((..((((((((....((.....)).))))).)))...)).(((((............))))). ( -23.80) >DroSim_CAF1 165235 103 + 1 GCAACCCGAAGAGGGGUUACAAACAGCAA--CAAAAAUGAAGUAGCUUGCCGGAGUAGGAGGAUCCGCCGGCGGAGAAGACAGCGAUGACAUGGACAUAAUUGCA (((((((.....)))(((.......((..--((....))..((..((((((((....((.....)).))))).)))...)).)).........)))....)))). ( -25.99) >DroYak_CAF1 172315 91 + 1 GCAACCCGAAGAGGGGUUA--------------AAAAAGAAGUAGCUUGCUGGAGAAGGAGGAUCCGCAGGCGGAAAAGACGGCGAUGACAUGGACAUAAUUGCA ..(((((......))))).--------------...........((((((.(((.........)))))))))..........(((((............))))). ( -22.50) >consensus GCAACCCGAAGAGGGGUUACAAACA__AA___AAAAAUGAAGUAGCUUGCCGGAGUAGGAGGAUCCGCCGGCGGAGAAGACAGCGAUGACAUGGACAUAAUUGCA ..(((((......))))).......................((..((((((((....((.....)).))))).)))...)).(((((............))))). (-21.01 = -21.23 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:24 2006