Locus 5934

Sequence ID 3R_DroMel_CAF1
Location 15,637,919 – 15,638,019
Length 100
Max. P 0.646897
window9687

overview

Window 7

Location 15,637,919 – 15,638,019
Length 100
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 82.33
Mean single sequence MFE -29.15
Consensus MFE -21.22
Energy contribution -21.38
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.73
SVM decision value 0.24
SVM RNA-class probability 0.646897
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15637919 100 + 27905053
UAAGGCGAACAUGUGCCAAGAUCAAUGUCGGCGGCGCCACGGUGGCGUGCGUAUCUGAAAGAUACUUA-------CGCG-UUUACUACAUAGCGGAUAAAACCAAUA-U---
...((((......))))........((((.((..(((....)))(((((.(((((.....))))).))-------))).-...........)).)))).........-.--- ( -27.80)
>DroPse_CAF1 177666 111 + 1
UAAGGCGAACAUGUGCCAAGAUCAAUGUCGGCGGCGCCACAGUGGCGUGCGUAUCCUACAGAUACUUGGCAAAAAUAAA-CUUAUAAAACGCCUGAUAAAACCAAUAAUACU
..(((((......((((((((((..(((.(((((((((.....))))).))...)).)))))).)))))))...(((..-..)))....))))).................. ( -30.70)
>DroEre_CAF1 144184 100 + 1
UAAGGCGAACAUGUGCCAAGAUCAAUGUCGGCGGCGCCACGGUGGCGUGCGUAUCUGAAAGAUACUUG-------UGCG-CUUACUGCAUAGCGGAUAAGACCAAUA-U---
...((((......)))).........(((.(((.((((.....)))))))(((((.....)))))(((-------(.((-((........)))).))))))).....-.--- ( -30.10)
>DroYak_CAF1 167679 100 + 1
UAAGGCGAACAUGUGCCAAGAUCAAUGUCGGCGGCGCCACGGUGGCGUGCGUAUCCGAAAGAUACUUA-------UGCG-UUUACUACAUAGCGGAUAAAACCAAUA-U---
...((((......))))........((((.((.(((((.....)))))(((((..(....).....))-------))).-...........)).)))).........-.--- ( -25.90)
>DroAna_CAF1 159645 103 + 1
UAAGGCGAACAUGUGCCAAGAUCAAUGUCGGCGGCGCCACCAUGGCGUGCGUAUCUGUCAGAUACUUA-------CGCCAGAUACU-UAUUGCGAAUAAAACCAAUA-UACU
....((((....(((((..(((....)))...))))).....(((((((.(((((.....))))).))-------)))))......-..))))..............-.... ( -29.20)
>DroPer_CAF1 195999 111 + 1
UAAGGCGAACAUGUGCCAAGAUCAAUGUCGGCGGCGCCACAGUGGCGUGCGUAUCCCACAGAUACUUGGCAAAAAUAAA-CUUAUAAAACGCCUGAUAAAACCAAUAAUACU
..(((((......((((((((((..((...((((((((.....))))).)))....))..))).)))))))...(((..-..)))....))))).................. ( -31.20)
>consensus
UAAGGCGAACAUGUGCCAAGAUCAAUGUCGGCGGCGCCACGGUGGCGUGCGUAUCCGAAAGAUACUUA_______UGCG_CUUACUACAUAGCGGAUAAAACCAAUA_U___
...((((......))))........((((.(((.((((.....)))))))(((((.....))))).............................)))).............. (-21.22 = -21.38 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:23 2006